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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133560 (14 seq.)
>C171021058
CP013113
Gammaproteobacteria
Pseudomonas aeruginosa PAER4_119 [CP013113]
6282860
6282783
-
Ile
GAT
-
¡û
>WENV181306031
OFIJ01001441
[OFIJ] marine metagenome; seawater
627
704
+
Ile
GAT
[ENA]
¢þ
>WENV181307013
OFIO01008661
[OFIO] marine metagenome; seawater
108
31
-
Ile
GAT
[ENA]
¢þ
>WENV181315892
OFJR01002232
[OFJR] marine metagenome; seawater
644
567
-
Ile
GAT
[ENA]
¢þ
>WENV170397263
CEUD01041991
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1225
1148
-
Ile
GAT
[ENA]
¢þ
>WENV170666660
JYMV01039419
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
6850
6927
+
Ile
GAT
[ENA]
¢þ
>WENV170763240
LWDU01004989
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
10
87
+
Ile
GAT
[ENA]
¢þ
>WENV170767077
LWDU01044285
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
78
1
-
Ile
GAT
[ENA]
¢þ
>C191123946
CP034368
Gammaproteobacteria
Pseudomonas aeruginosa B41226 [CP034368]
6716304
6716381
+
Ile
GAT
-
¡û
>C191125041
CP034434
Gammaproteobacteria
Pseudomonas aeruginosa SP2230 [CP034434]
4705984
4705907
-
Ile
GAT
-
¡û
>C191125047
CP034434
Gammaproteobacteria
Pseudomonas aeruginosa SP2230 [CP034434]
4207078
4207001
-
Ile
GAT
-
¡û
>C191125090
CP034435
Gammaproteobacteria
Pseudomonas aeruginosa B14130 [CP034435]
6167388
6167311
-
Ile
GAT
-
¡û
>C191125134
CP034436
Gammaproteobacteria
Pseudomonas aeruginosa B17932 [CP034436]
1237722
1237799
+
Ile
GAT
-
¡û
>W1511350326
JRMB01000004
Gammaproteobacteria
Pseudomonas lutea DSM 17257 [JRMB]
2627
2705
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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