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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13376 (56 seq.)
>W1710989113
LPVR01000001
Bacillota
Streptococcus equinus [LPVR]
504499
504587
+
Ser
CGA
[ENA]
¡û
>W1711006406
LQOI01000112
Bacillota
Streptococcus lutetiensis [LQOI]
6352
6440
+
Ser
CGA
[ENA]
¡û
>W131217630
ATWZ01000005
Bacillota
Streptococcus equinus SN033 [ATWZ]
1644
1556
-
Ser
CGA
[ENA]
¡û
>WENV180116407
OAQU01000346
[OAQU] human gut metagenome; ENVO:feces
6468
6556
+
Ser
CGA
[ENA]
¢þ
>WENV180116697
OAQX01000118
[OAQX] human gut metagenome; ENVO:feces
7391
7303
-
Ser
CGA
[ENA]
¢þ
>WENV180117329
OARK01000151
[OARK] human gut metagenome; ENVO:feces
16135
16223
+
Ser
CGA
[ENA]
¢þ
>WENV180316631
OBKI01072454
[OBKI] human gut metagenome; human gut
134
222
+
Ser
CGA
[ENA]
¢þ
>WENV180401598
OBRM01000214
[OBRM] human gut metagenome; ENVO:feces
6468
6556
+
Ser
CGA
[ENA]
¢þ
>WENV180408321
OBUS01000520
[OBUS] human gut metagenome; faeces
21984
22072
+
Ser
CGA
[ENA]
¢þ
>WENV180418850
OBVL01000219
[OBVL] human gut metagenome; faeces
206
118
-
Ser
CGA
[ENA]
¢þ
>WENV180482549
OBZG01001121
[OBZG] human gut metagenome; faeces
206
118
-
Ser
CGA
[ENA]
¢þ
>W141091745
AUZG01000012
Bacillota
Streptococcus equinus ATCC 33317 [AUZG]
234797
234709
-
Ser
CGA
[ENA]
¡û
>W141091776
AUZH01000012
Bacillota
Streptococcus equinus JB1 [AUZH]
13778
13690
-
Ser
CGA
[ENA]
¡û
>WENV181794875
OGRS01004712
[OGRS] human gut metagenome; faeces
166
78
-
Ser
CGA
[ENA]
¢þ
>WENV182426138
OIHN01013839
[OIHN] human gut metagenome; human gut
336
424
+
Ser
CGA
[ENA]
¢þ
>WENV182441880
OIKE01004109
[OIKE] human gut metagenome; human gut
1955
2043
+
Ser
CGA
[ENA]
¢þ
>WENV182465930
OIOO01001576
[OIOO] human gut metagenome; human gut
3077
2989
-
Ser
CGA
[ENA]
¢þ
>WENV182497373
OITK01008569
[OITK] human gut metagenome; human gut
69
157
+
Ser
CGA
[ENA]
¢þ
>WENV182901459
OKSV01002277
[OKSV] human gut metagenome; feces
192
104
-
Ser
CGA
[ENA]
¢þ
>WENV182959018
OKWI01000172
[OKWI] human gut metagenome; stool
21992
22080
+
Ser
CGA
[ENA]
¢þ
>WENV182962373
OKWN01000376
[OKWN] human gut metagenome; stool
214
126
-
Ser
CGA
[ENA]
¢þ
>WENV182965771
OKWT01000182
[OKWT] human gut metagenome; stool
22001
22089
+
Ser
CGA
[ENA]
¢þ
>WENV182975165
OKXT01011706
[OKXT] human gut metagenome; human gut
108
20
-
Ser
CGA
[ENA]
¢þ
>WENV183010759
OLDX01000708
[OLDX] human gut metagenome; human gut
262
350
+
Ser
CGA
[ENA]
¢þ
>WENV183011165
OLDY01014260
[OLDY] human gut metagenome; human gut
523
435
-
Ser
CGA
[ENA]
¢þ
>WENV183238022
OLQY01003317
[OLQY] human gut metagenome; faeces
166
78
-
Ser
CGA
[ENA]
¢þ
>WENV183785910
PPYF01298693
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6714
6802
+
Ser
CGA
[ENA]
¢þ
>C181207768
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
1745548
1745636
+
Ser
CGA
-
¡û
>C181211230
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
1581853
1581941
+
Ser
CGA
-
¡û
>C191199792
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
395884
395972
+
Ser
CGA
-
¡û
>C191204496
LR134292
Bacillota
Streptococcus equinus NCTC10389 [LR134292]
1595138
1595226
+
Ser
CGA
-
¡û
>C191223114
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
195548
195460
-
Ser
CGA
-
¡û
>W141733170
JNKQ01000002
Bacillota
Streptococcus equinus 2B [JNKQ]
422040
422128
+
Ser
CGA
[ENA]
¡û
>W1910181498
BJMB01000004
Bacillota
Streptococcus equinus NBRC 12057 [BJMB]
93324
93236
-
Ser
CGA
[ENA]
¡û
>C141001335
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
1770562
1770650
+
Ser
CGA
[Ensembl]
¡û
>W1911539646
ONUZ01000010
Bacillota
Streptococcus equinus [ONUZ]
1189
1101
-
Ser
CGA
[ENA]
¡û
>W1810829838
QSLI01000020
Bacillota
Streptococcus lutetiensis AM25-7 [QSLI]
196
108
-
Ser
CGA
[ENA]
¡û
>W1511228274
JNLO01000001
Bacillota
Streptococcus equinus AG46 [JNLO]
1737955
1737867
-
Ser
CGA
[ENA]
¡û
>W11149884
AEVB01000035
Bacillota
Streptococcus equinus ATCC 9812 [AEVB]
95278
95366
+
Ser
CGA
[ENA]
¡û
>C161059394
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
1599335
1599423
+
Ser
CGA
[Ensembl]
¡û
>W1610843989
LPVR01000001
Bacillota
Streptococcus equinus [LPVR]
504499
504587
+
Ser
CGA
[ENA]
¡û
>W1610857056
LQOI01000112
Bacillota
Streptococcus lutetiensis [LQOI]
6352
6440
+
Ser
CGA
[ENA]
¡û
>W1710525274
FNJK01000004
Bacillota
Streptococcus equinus [FNJK]
187543
187631
+
Ser
CGA
[ENA]
¡û
>W1710525961
FNJX01000001
Bacillota
Streptococcus equinus [FNJX]
213999
213911
-
Ser
CGA
[ENA]
¡û
>W1710525997
FNJY01000001
Bacillota
Streptococcus equinus [FNJY]
1222617
1222705
+
Ser
CGA
[ENA]
¡û
>W1710526159
FNKC01000001
Bacillota
Streptococcus equinus [FNKC]
1205250
1205338
+
Ser
CGA
[ENA]
¡û
>W1710526244
FNKE01000001
Bacillota
Streptococcus equinus [FNKE]
1304346
1304434
+
Ser
CGA
[ENA]
¡û
>W1710528057
FNMW01000001
Bacillota
Streptococcus equinus [FNMW]
1234417
1234505
+
Ser
CGA
[ENA]
¡û
>W1710541012
FNXZ01000001
Bacillota
Streptococcus sp. 45 [FNXZ]
770554
770642
+
Ser
CGA
[ENA]
¡û
>W1710543154
FNZS01000002
Bacillota
Streptococcus equinus [FNZS]
514597
514685
+
Ser
CGA
[ENA]
¡û
>W1710543319
FNZW01000001
Bacillota
Streptococcus equinus [FNZW]
2359
2271
-
Ser
CGA
[ENA]
¡û
>W1710549984
FOEX01000007
Bacillota
Streptococcus equinus [FOEX]
2209
2121
-
Ser
CGA
[ENA]
¡û
>W1710557898
FOLK01000001
Bacillota
Streptococcus equinus [FOLK]
790475
790563
+
Ser
CGA
[ENA]
¡û
>W1710568036
FOTG01000002
Bacillota
Streptococcus equinus JB1 [FOTG]
437598
437686
+
Ser
CGA
[ENA]
¡û
>W1710574219
FOYC01000001
Bacillota
Streptococcus equinus [FOYC]
233622
233534
-
Ser
CGA
[ENA]
¡û
>W1710575260
FOZA01000002
Bacillota
Streptococcus equinus [FOZA]
147032
146944
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK