Home | tRNADB-CE : tRNA gene database curated manually by experts

This is the navigation skips to jump to main contents

Jump to main contents.

Top | Keyword | BLAST | Download | HOW TO USE

tRNA genes clustered and arranged according to each identical group

HIT: 1 Group(s).

Download Sequence	Representative sequence of each cluster
View ClustalW result

Sort by Identical group No.

Sort by the number of tRNAs in the Identical group

Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
Identical group No.133776 (120 seq.)
	>A171003591	CP004144	Euryarchaeota	Methanosarcina mazei Tuc01 [CP004144]	2421492	2421569	+	Glu	TTC	-	○
	>A171004549	CP009501	Euryarchaeota	Methanosarcina thermophila TM-1 [CP009501]	291042	290965	-	Glu	TTC	-	○
	>A171004550	CP009501	Euryarchaeota	Methanosarcina thermophila TM-1 [CP009501]	290536	290459	-	Glu	TTC	-	○
	>A171004562	CP009502	Euryarchaeota	Methanosarcina thermophila CHTI-55 [CP009502]	621534	621611	+	Glu	TTC	-	○
	>A171004563	CP009502	Euryarchaeota	Methanosarcina thermophila CHTI-55 [CP009502]	622040	622117	+	Glu	TTC	-	○
	>A171004730	CP009505	Euryarchaeota	Methanosarcina sp. MTP4 [CP009505]	2905826	2905903	+	Glu	TTC	-	○
	>A171004731	CP009505	Euryarchaeota	Methanosarcina sp. MTP4 [CP009505]	2908176	2908253	+	Glu	TTC	-	○
	>A171004776	CP009506	Euryarchaeota	Methanosarcina siciliae T4/M [CP009506]	2116804	2116881	+	Glu	TTC	-	○
	>A171004777	CP009506	Euryarchaeota	Methanosarcina siciliae T4/M [CP009506]	2117246	2117323	+	Glu	TTC	-	○
	>A171004852	CP009507	Euryarchaeota	Methanosarcina siciliae HI350 [CP009507]	1930482	1930405	-	Glu	TTC	-	○
	>A171004853	CP009507	Euryarchaeota	Methanosarcina siciliae HI350 [CP009507]	1930010	1929933	-	Glu	TTC	-	○
	>A171004880	CP009508	Euryarchaeota	Methanosarcina siciliae C2J [CP009508]	1688000	1688077	+	Glu	TTC	-	○
	>A171004881	CP009508	Euryarchaeota	Methanosarcina siciliae C2J [CP009508]	1688427	1688504	+	Glu	TTC	-	○
	>A171004940	CP009509	Euryarchaeota	Methanosarcina mazei WWM610 [CP009509]	2597033	2597110	+	Glu	TTC	-	○
	>A171004941	CP009509	Euryarchaeota	Methanosarcina mazei WWM610 [CP009509]	2597663	2597740	+	Glu	TTC	-	○
	>A171005007	CP009511	Euryarchaeota	Methanosarcina mazei SarPi [CP009511]	2822115	2822038	-	Glu	TTC	-	○
	>A171005008	CP009511	Euryarchaeota	Methanosarcina mazei SarPi [CP009511]	2821487	2821410	-	Glu	TTC	-	○
	>A171005101	CP009513	Euryarchaeota	Methanosarcina mazei LYC [CP009513]	3472975	3473052	+	Glu	TTC	-	○
	>A171005102	CP009513	Euryarchaeota	Methanosarcina mazei LYC [CP009513]	3473605	3473682	+	Glu	TTC	-	○
	>A171005268	CP009516	Euryarchaeota	Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]	3551133	3551056	-	Glu	TTC	-	○
	>A171005269	CP009516	Euryarchaeota	Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]	3550690	3550613	-	Glu	TTC	-	○
	>A171005302	CP009517	Euryarchaeota	Methanosarcina barkeri 3 [CP009517]	1630778	1630852	+	Glu	TTC	-	○
	>A171005303	CP009517	Euryarchaeota	Methanosarcina barkeri 3 [CP009517]	1631541	1631618	+	Glu	TTC	-	○
	>A171005390	CP009518	Euryarchaeota	Methanococcoides methylutens MM1 [CP009518]	777165	777088	-	Glu	TTC	-	○
	>A171005431	CP009520	Euryarchaeota	Methanosarcina vacuolata Z-761 [CP009520]	2630906	2630829	-	Glu	TTC	-	○
	>A171005432	CP009520	Euryarchaeota	Methanosarcina vacuolata Z-761 [CP009520]	2629019	2628942	-	Glu	TTC	-	○
	>A171005598	CP009528	Euryarchaeota	Methanosarcina barkeri MS [CP009528]	1996377	1996300	-	Glu	TTC	-	○
	>A171005599	CP009528	Euryarchaeota	Methanosarcina barkeri MS [CP009528]	1994823	1994746	-	Glu	TTC	-	○
	>A171005613	CP009530	Euryarchaeota	Methanosarcina barkeri 227 [CP009530]	1128496	1128573	+	Glu	TTC	-	○
	>A171005614	CP009530	Euryarchaeota	Methanosarcina barkeri 227 [CP009530]	1130050	1130127	+	Glu	TTC	-	○
	>WENV170008133	AMZC01002621	[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor		5675	5598	-	Glu	TTC	[ENA]	◯
	>At0989	CP000300	Euryarchaeota	Methanococcoides burtonii DSM 6242 [CP000300]	157872	157795	-	Glu	TTC	[Ensembl]	○
	>At1380	AE010299	Euryarchaeota	Methanosarcina acetivorans C2A [AE010299]	1681890	1681967	+	Glu	TTC	[Ensembl]	○
	>At1381	AE010299	Euryarchaeota	Methanosarcina acetivorans C2A [AE010299]	1682346	1682423	+	Glu	TTC	[Ensembl]	○
	>WENV170684835	LFRM01060395	[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle		7682	7605	-	Glu	TTC	[ENA]	◯
	>WENV170684836	LFRM01060395	[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle		7176	7099	-	Glu	TTC	[ENA]	◯
	>WENV170727055	LSQX01403059	[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition		7726	7803	+	Glu	TTC	[ENA]	◯
	>WENV170727056	LSQX01403059	[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition		8381	8458	+	Glu	TTC	[ENA]	◯
	>W1910226834	FNCA01000006	Euryarchaeota	Methanolobus vulcani PL 12/M [FNCA]	160827	160904	+	Glu	TTC	[ENA]	○
	>W1910569228	JJOR01000018	Euryarchaeota	Methanosarcina mazei 2.F.A.2.3 [JJOR]	7639	7562	-	Glu	TTC	[ENA]	○
	>W1910569229	JJOR01000018	Euryarchaeota	Methanosarcina mazei 2.F.A.2.3 [JJOR]	6984	6907	-	Glu	TTC	[ENA]	○
	>W1910569301	JJOS01000061	Euryarchaeota	Methanosarcina mazei 2.F.A.2.4 [JJOS]	11017	11094	+	Glu	TTC	[ENA]	○
	>W1910569302	JJOS01000061	Euryarchaeota	Methanosarcina mazei 2.F.A.2.4 [JJOS]	11672	11749	+	Glu	TTC	[ENA]	○
	>W1910569342	JJOT01000023	Euryarchaeota	Methanosarcina mazei 2.F.T.0.2 [JJOT]	44090	44013	-	Glu	TTC	[ENA]	○
	>W1910569343	JJOT01000023	Euryarchaeota	Methanosarcina mazei 2.F.T.0.2 [JJOT]	43435	43358	-	Glu	TTC	[ENA]	○
	>W1910569425	JJOU01000228	Euryarchaeota	Methanosarcina mazei 2.F.T.2.6 [JJOU]	9860	9937	+	Glu	TTC	[ENA]	○
	>W1910569426	JJOU01000228	Euryarchaeota	Methanosarcina mazei 2.F.T.2.6 [JJOU]	10515	10592	+	Glu	TTC	[ENA]	○
	>W1910569685	JJPA01000016	Euryarchaeota	Methanosarcina mazei 3.F.A.1A.1 [JJPA]	61344	61267	-	Glu	TTC	[ENA]	○
	>W1910569686	JJPA01000016	Euryarchaeota	Methanosarcina mazei 3.F.A.1A.1 [JJPA]	60689	60612	-	Glu	TTC	[ENA]	○
	>W1910569751	JJPB01000075	Euryarchaeota	Methanosarcina mazei 3.F.A.1A.3 [JJPB]	48961	49038	+	Glu	TTC	[ENA]	○
	>W1910569752	JJPB01000075	Euryarchaeota	Methanosarcina mazei 3.F.A.1A.3 [JJPB]	49616	49693	+	Glu	TTC	[ENA]	○
	>W1910569926	JJPE01000139	Euryarchaeota	Methanosarcina mazei 3.F.A.2.3 [JJPE]	23154	23077	-	Glu	TTC	[ENA]	○
	>W1910569927	JJPE01000139	Euryarchaeota	Methanosarcina mazei 3.F.A.2.3 [JJPE]	22499	22422	-	Glu	TTC	[ENA]	○
	>W1910570029	JJPG01000143	Euryarchaeota	Methanosarcina mazei 3.F.A.2.6 [JJPG]	8141	8064	-	Glu	TTC	[ENA]	○
	>W1910570030	JJPG01000143	Euryarchaeota	Methanosarcina mazei 3.F.A.2.6 [JJPG]	7486	7409	-	Glu	TTC	[ENA]	○
	>W1910570182	JJPJ01000114	Euryarchaeota	Methanosarcina mazei 3.F.T.1A.2 [JJPJ]	44941	45018	+	Glu	TTC	[ENA]	○
	>W1910570183	JJPJ01000114	Euryarchaeota	Methanosarcina mazei 3.F.T.1A.2 [JJPJ]	45596	45673	+	Glu	TTC	[ENA]	○
	>W1910570271	JJPL01000112	Euryarchaeota	Methanosarcina mazei 3.F.T.2.1 [JJPL]	62051	61974	-	Glu	TTC	[ENA]	○
	>W1910570272	JJPL01000112	Euryarchaeota	Methanosarcina mazei 3.F.T.2.1 [JJPL]	61396	61319	-	Glu	TTC	[ENA]	○
	>W1910570329	JJPM01000206	Euryarchaeota	Methanosarcina mazei 3.H.A.1A.1 [JJPM]	4575	4498	-	Glu	TTC	[ENA]	○
	>W1910570330	JJPM01000206	Euryarchaeota	Methanosarcina mazei 3.H.A.1A.1 [JJPM]	3920	3843	-	Glu	TTC	[ENA]	○
	>W1910570373	JJPN01000103	Euryarchaeota	Methanosarcina mazei 3.H.A.1A.2 [JJPN]	30895	30818	-	Glu	TTC	[ENA]	○
	>W1910570374	JJPN01000103	Euryarchaeota	Methanosarcina mazei 3.H.A.1A.2 [JJPN]	30240	30163	-	Glu	TTC	[ENA]	○
	>W1910570408	JJPO01000016	Euryarchaeota	Methanosarcina mazei 3.H.A.2.1 [JJPO]	10002	10079	+	Glu	TTC	[ENA]	○
	>W1910570409	JJPO01000016	Euryarchaeota	Methanosarcina mazei 3.H.A.2.1 [JJPO]	10607	10684	+	Glu	TTC	[ENA]	○
	>W1910570493	JJPP01000143	Euryarchaeota	Methanosarcina mazei 3.H.A.2.4 [JJPP]	37563	37640	+	Glu	TTC	[ENA]	○
	>W1910570494	JJPP01000143	Euryarchaeota	Methanosarcina mazei 3.H.A.2.4 [JJPP]	38218	38295	+	Glu	TTC	[ENA]	○
	>W1910570595	JJPR01000145	Euryarchaeota	Methanosarcina mazei 3.H.A.2.6 [JJPR]	72251	72328	+	Glu	TTC	[ENA]	○
	>W1910570596	JJPR01000145	Euryarchaeota	Methanosarcina mazei 3.H.A.2.6 [JJPR]	72906	72983	+	Glu	TTC	[ENA]	○
	>W1910570673	JJPT01000091	Euryarchaeota	Methanosarcina mazei 3.H.M.1A.1 [JJPT]	15299	15222	-	Glu	TTC	[ENA]	○
	>W1910570674	JJPT01000091	Euryarchaeota	Methanosarcina mazei 3.H.M.1A.1 [JJPT]	14644	14567	-	Glu	TTC	[ENA]	○
	>W1910570795	JJPV01000135	Euryarchaeota	Methanosarcina mazei 3.H.M.1B.2 [JJPV]	46477	46400	-	Glu	TTC	[ENA]	○
	>W1910570796	JJPV01000135	Euryarchaeota	Methanosarcina mazei 3.H.M.1B.2 [JJPV]	45822	45745	-	Glu	TTC	[ENA]	○
	>W1910570877	JJPX01000080	Euryarchaeota	Methanosarcina mazei 3.H.M.2.7 [JJPX]	72228	72305	+	Glu	TTC	[ENA]	○
	>W1910570878	JJPX01000080	Euryarchaeota	Methanosarcina mazei 3.H.M.2.7 [JJPX]	72883	72960	+	Glu	TTC	[ENA]	○
	>W1910570916	JJPY01000053	Euryarchaeota	Methanosarcina mazei 3.H.T.1A.1 [JJPY]	9881	9958	+	Glu	TTC	[ENA]	○
	>W1910570917	JJPY01000053	Euryarchaeota	Methanosarcina mazei 3.H.T.1A.1 [JJPY]	10536	10613	+	Glu	TTC	[ENA]	○
	>W1910570991	JJPZ01000136	Euryarchaeota	Methanosarcina mazei 3.H.T.1A.2 [JJPZ]	30895	30818	-	Glu	TTC	[ENA]	○
	>W1910570992	JJPZ01000136	Euryarchaeota	Methanosarcina mazei 3.H.T.1A.2 [JJPZ]	30240	30163	-	Glu	TTC	[ENA]	○
	>W1910571026	JJQA01000085	Euryarchaeota	Methanosarcina mazei 1.F.A.1A.3 [JJQA]	120695	120618	-	Glu	TTC	[ENA]	○
	>W1910571027	JJQA01000085	Euryarchaeota	Methanosarcina mazei 1.F.A.1A.3 [JJQA]	120040	119963	-	Glu	TTC	[ENA]	○
	>W1910571220	JJQE01000082	Euryarchaeota	Methanosarcina mazei 1.F.M.0.5 [JJQE]	26538	26461	-	Glu	TTC	[ENA]	○
	>W1910571221	JJQE01000082	Euryarchaeota	Methanosarcina mazei 1.F.M.0.5 [JJQE]	25883	25806	-	Glu	TTC	[ENA]	○
	>W1910571319	JJQG01000087	Euryarchaeota	Methanosarcina mazei 1.H.A.1A.1 [JJQG]	7639	7562	-	Glu	TTC	[ENA]	○
	>W1910571320	JJQG01000087	Euryarchaeota	Methanosarcina mazei 1.H.A.1A.1 [JJQG]	6984	6907	-	Glu	TTC	[ENA]	○
	>W1910571375	JJQH01000104	Euryarchaeota	Methanosarcina mazei 1.H.A.1A.3 [JJQH]	4560	4483	-	Glu	TTC	[ENA]	○
	>W1910571376	JJQH01000104	Euryarchaeota	Methanosarcina mazei 1.H.A.1A.3 [JJQH]	3905	3828	-	Glu	TTC	[ENA]	○
	>W1910571481	JJQJ01000134	Euryarchaeota	Methanosarcina mazei 1.H.A.1A.6 [JJQJ]	7639	7562	-	Glu	TTC	[ENA]	○
	>W1910571482	JJQJ01000134	Euryarchaeota	Methanosarcina mazei 1.H.A.1A.6 [JJQJ]	6984	6907	-	Glu	TTC	[ENA]	○
	>W1910571557	JJQK01000275	Euryarchaeota	Methanosarcina mazei 1.H.A.2.1 [JJQK]	23392	23315	-	Glu	TTC	[ENA]	○
	>W1910571558	JJQK01000275	Euryarchaeota	Methanosarcina mazei 1.H.A.2.1 [JJQK]	22737	22660	-	Glu	TTC	[ENA]	○
	>W1910571621	JJQM01000042	Euryarchaeota	Methanosarcina mazei 1.H.A.2.3 [JJQM]	9907	9984	+	Glu	TTC	[ENA]	○
	>W1910571622	JJQM01000042	Euryarchaeota	Methanosarcina mazei 1.H.A.2.3 [JJQM]	10562	10639	+	Glu	TTC	[ENA]	○
	>W1910571708	JJQN01000113	Euryarchaeota	Methanosarcina mazei 1.H.A.2.6 [JJQN]	71828	71905	+	Glu	TTC	[ENA]	○
	>W1910571709	JJQN01000113	Euryarchaeota	Methanosarcina mazei 1.H.A.2.6 [JJQN]	72433	72510	+	Glu	TTC	[ENA]	○
	>W1910571770	JJQO01000288	Euryarchaeota	Methanosarcina mazei 1.H.A.2.7 [JJQO]	9907	9984	+	Glu	TTC	[ENA]	○
	>W1910571771	JJQO01000288	Euryarchaeota	Methanosarcina mazei 1.H.A.2.7 [JJQO]	10562	10639	+	Glu	TTC	[ENA]	○
	>W1910571843	JJQP01000302	Euryarchaeota	Methanosarcina mazei 1.H.A.2.8 [JJQP]	33281	33358	+	Glu	TTC	[ENA]	○
	>W1910571844	JJQP01000302	Euryarchaeota	Methanosarcina mazei 1.H.A.2.8 [JJQP]	33936	34013	+	Glu	TTC	[ENA]	○
	>W1910571873	JJQQ01000091	Euryarchaeota	Methanosarcina mazei 1.H.M.0.1 [JJQQ]	8947	8870	-	Glu	TTC	[ENA]	○
	>W1910571874	JJQQ01000091	Euryarchaeota	Methanosarcina mazei 1.H.M.0.1 [JJQQ]	8292	8215	-	Glu	TTC	[ENA]	○
	>W1910571907	JJQR01000023	Euryarchaeota	Methanosarcina mazei 1.H.M.1A.1 [JJQR]	46132	46209	+	Glu	TTC	[ENA]	○
	>W1910571908	JJQR01000023	Euryarchaeota	Methanosarcina mazei 1.H.M.1A.1 [JJQR]	46787	46864	+	Glu	TTC	[ENA]	○
	>W1910572120	JJQV01000047	Euryarchaeota	Methanosarcina mazei 1.H.M.2.2 [JJQV]	7639	7562	-	Glu	TTC	[ENA]	○
	>W1910572121	JJQV01000047	Euryarchaeota	Methanosarcina mazei 1.H.M.2.2 [JJQV]	6984	6907	-	Glu	TTC	[ENA]	○
	>W1910572172	JJQW01000079	Euryarchaeota	Methanosarcina mazei 1.H.M.2.3 [JJQW]	61860	61783	-	Glu	TTC	[ENA]	○
	>W1910572173	JJQW01000079	Euryarchaeota	Methanosarcina mazei 1.H.M.2.3 [JJQW]	61205	61128	-	Glu	TTC	[ENA]	○
	>W1910572237	JJQX01000242	Euryarchaeota	Methanosarcina mazei 1.H.M.2.4 [JJQX]	7611	7534	-	Glu	TTC	[ENA]	○
	>W1910572238	JJQX01000242	Euryarchaeota	Methanosarcina mazei 1.H.M.2.4 [JJQX]	6956	6879	-	Glu	TTC	[ENA]	○
	>W1910572347	JJRA01000012	Euryarchaeota	Methanosarcina mazei 1.H.T.2.3 [JJRA]	7639	7562	-	Glu	TTC	[ENA]	○
	>W1910572348	JJRA01000012	Euryarchaeota	Methanosarcina mazei 1.H.T.2.3 [JJRA]	6984	6907	-	Glu	TTC	[ENA]	○
	>W1910572438	JJRB01000124	Euryarchaeota	Methanosarcina mazei 1.H.T.2.5 [JJRB]	56341	56264	-	Glu	TTC	[ENA]	○
	>W1910572439	JJRB01000124	Euryarchaeota	Methanosarcina mazei 1.H.T.2.5 [JJRB]	55686	55609	-	Glu	TTC	[ENA]	○
	>W1910575046	JQLR01000001	Euryarchaeota	Methanosarcina soligelidi SMA-21 [JQLR]	2147577	2147654	+	Glu	TTC	[ENA]	○
	>W1910575047	JQLR01000001	Euryarchaeota	Methanosarcina soligelidi SMA-21 [JQLR]	2148184	2148261	+	Glu	TTC	[ENA]	○
	>W1910575271	JRHO01000010	Euryarchaeota	Methanococcoides methylutens DSM 2657 [JRHO]	66127	66050	-	Glu	TTC	[ENA]	○
	>W1610000133	AADH02000007	Euryarchaeota	Methanococcoides burtonii DSM 6242 [AADH]	39448	39525	+	Glu	TTC	[ENA]	○
	>W1610032624	AZAJ01000001	Euryarchaeota	Methanolobus tindarius DSM 2278 [AZAJ]	11053	10976	-	Glu	TTC	[ENA]	○
	>W1610048613	BBEF01000054	Euryarchaeota	Methanosarcina barkeri JCM 10043 [BBEF]	20290	20367	+	Glu	TTC	[ENA]	○
	>W1610048614	BBEF01000054	Euryarchaeota	Methanosarcina barkeri JCM 10043 [BBEF]	21849	21926	+	Glu	TTC	[ENA]	○
Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision

Download Sequence	Representative sequence of each cluster
View ClustalW result

BACK