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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133820 (57 seq.)
>W131159434
AQVB01000002
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
115837
115914
+
Arg
ACG
[ENA]
¡û
>W131159443
AQVB01000005
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
50362
50439
+
Arg
ACG
[ENA]
¡û
>W1711116057
LUAS01000004
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
40416
40339
-
Arg
ACG
[ENA]
¡û
>W1711116085
LUAS01000103
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
9145
9222
+
Arg
ACG
[ENA]
¡û
>W1711185166
LWNE01000029
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
59799
59722
-
Arg
ACG
[ENA]
¡û
>W1711185192
LWNE01000124
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
64089
64166
+
Arg
ACG
[ENA]
¡û
>W131169100
AREM01000002
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
92013
92090
+
Arg
ACG
[ENA]
¡û
>W131169118
AREM01000017
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
53423
53500
+
Arg
ACG
[ENA]
¡û
>W141194179
AYSV01000029
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
1904
1981
+
Arg
ACG
[ENA]
¡û
>W141194180
AYSV01000029
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
2018
2095
+
Arg
ACG
[ENA]
¡û
>W141200406
AYXT01000014
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
246847
246924
+
Arg
ACG
[ENA]
¡û
>WENV183710667
PDWI01051240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1341
1264
-
Arg
ACG
[ENA]
¢þ
>WENV183710668
PDWI01051240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1223
1146
-
Arg
ACG
[ENA]
¢þ
>WENV170684110
LFRM01020247
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2938
2861
-
Arg
ACG
[ENA]
¢þ
>WENV170686039
LFRM01123205
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1683
1760
+
Arg
ACG
[ENA]
¢þ
>WENV170686040
LFRM01123205
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1775
1852
+
Arg
ACG
[ENA]
¢þ
>WENV170686143
LFRM01129040
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1839
1762
-
Arg
ACG
[ENA]
¢þ
>WENV170717799
LSQX01050003
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
32834
32757
-
Arg
ACG
[ENA]
¢þ
>WENV170717800
LSQX01050003
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
32739
32662
-
Arg
ACG
[ENA]
¢þ
>WENV170718459
LSQX01076671
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29348
29425
+
Arg
ACG
[ENA]
¢þ
>WENV170720168
LSQX01143716
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
128
205
+
Arg
ACG
[ENA]
¢þ
>WENV170720498
LSQX01155490
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10163
10086
-
Arg
ACG
[ENA]
¢þ
>WENV170721570
LSQX01195375
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5039
5116
+
Arg
ACG
[ENA]
¢þ
>WENV170722180
LSQX01219880
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13499
13576
+
Arg
ACG
[ENA]
¢þ
>WENV170724908
LSQX01323214
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8151
8228
+
Arg
ACG
[ENA]
¢þ
>WENV170724949
LSQX01324600
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
27039
27116
+
Arg
ACG
[ENA]
¢þ
>WENV170726859
LSQX01396425
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29448
29525
+
Arg
ACG
[ENA]
¢þ
>C181049103
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
619915
619838
-
Arg
ACG
-
¡û
>C181049968
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
605509
605432
-
Arg
ACG
-
¡û
>C181050042
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
604851
604774
-
Arg
ACG
-
¡û
>C181050124
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
613745
613668
-
Arg
ACG
-
¡û
>C181152575
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
851022
851099
+
Arg
ACG
-
¡û
>C181152577
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1545950
1546027
+
Arg
ACG
-
¡û
>C191208091
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
606582
606505
-
Arg
ACG
-
¡û
>W141560349
JHXN01000001
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
310778
310855
+
Arg
ACG
[ENA]
¡û
>W141562674
JHZJ01000004
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
204634
204557
-
Arg
ACG
[ENA]
¡û
>W1910225816
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
500119
500042
-
Arg
ACG
[ENA]
¡û
>W1910225817
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
500005
499928
-
Arg
ACG
[ENA]
¡û
>W1910891688
NEXS01000009
Betaproteobacteria
Advenella sp. S44 [NEXS]
229287
229364
+
Arg
ACG
[ENA]
¡û
>W1911595538
PNGK01000007
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
50238
50315
+
Arg
ACG
[ENA]
¡û
>W1911595542
PNGK01000008
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
33076
33153
+
Arg
ACG
[ENA]
¡û
>W1810701973
QMFX01000003
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
212127
212050
-
Arg
ACG
[ENA]
¡û
>C151004946
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
1474261
1474184
-
Arg
ACG
[Ensembl]
¡û
>W1511350716
JRMO01000013
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
213328
213251
-
Arg
ACG
[ENA]
¡û
>W1511351531
JRNI01000015
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
59778
59701
-
Arg
ACG
[ENA]
¡û
>W1511351537
JRNI01000017
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
44512
44435
-
Arg
ACG
[ENA]
¡û
>C11122623
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1256995
1256918
-
Arg
ACG
[Ensembl]
¡û
>W1511458954
JVJW01000112
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
75616
75693
+
Arg
ACG
[ENA]
¡û
>W1511461240
JVMH01000070
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
21752
21829
+
Arg
ACG
[ENA]
¡û
>W1511461276
JVMH01000139
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
45301
45224
-
Arg
ACG
[ENA]
¡û
>W11171195
AFQG01000011
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
33700
33623
-
Arg
ACG
[ENA]
¡û
>C121004867
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
648936
648859
-
Arg
ACG
[Ensembl]
¡û
>C121009954
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
636911
636834
-
Arg
ACG
[Ensembl]
¡û
>C131005628
CP003733
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii [ex Strigomonas [CP003733]
356568
356645
+
Arg
ACG
[Ensembl]
¡û
>C131007359
CP003807
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii TCC012E [CP003807]
185645
185722
+
Arg
ACG
[Ensembl]
¡û
>W1610606560
LFTA01000018
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
2938
2861
-
Arg
ACG
[ENA]
¡û
>W1710727847
LFTA01000018
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
2938
2861
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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