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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13412 (37 seq.)
>W1710875990
LMOV01000024
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
352328
352237
-
Leu
TAA
[ENA]
¡û
>W1710892921
LNEG01000020
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
372
463
+
Leu
TAA
[ENA]
¡û
>W1711073668
LSIU01000623
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
204
295
+
Leu
TAA
[ENA]
¡û
>W1711075797
LSKS01000165
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
2494
2403
-
Leu
TAA
[ENA]
¡û
>W1711504609
MKUS01000048
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
59498
59589
+
Leu
TAA
[ENA]
¡û
>C171049720
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
63733
63642
-
Leu
TAA
-
¡û
>C026277
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
738694
738785
+
Leu
TAA
[Ensembl]
¡û
>WENV180283852
OBID01004396
[OBID] metagenome; sludge
2097
2006
-
Leu
TAA
[ENA]
¢þ
>WENV181170285
OEIV010035283
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
519
610
+
Leu
TAA
[ENA]
¢þ
>WENV181414189
OGCL01000087
[OGCL] hot springs metagenome; Hot spring water
18471
18562
+
Leu
TAA
[ENA]
¢þ
>W141238146
BBJX01000009
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
119929
120020
+
Leu
TAA
[ENA]
¡û
>WENV170711679
LNFM01006449
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12624
12533
-
Leu
TAA
[ENA]
¢þ
>C181019016
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1724583
1724492
-
Leu
TAA
-
¡û
>W09106053
AASQ01000026
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
16499
16408
-
Leu
TAA
[ENA]
¡û
>W09117926
ACCM01000001
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
147222
147131
-
Leu
TAA
[ENA]
¡û
>C09104046
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1242102
1242193
+
Leu
TAA
[Ensembl]
¡û
>W1910700389
MESL01000051
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 [MESL]
21523
21614
+
Leu
TAA
[ENA]
¡û
>W1910972114
NKDB02000004
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
160301
160210
-
Leu
TAA
[ENA]
¡û
>W1911768535
QXGR01000005
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
284281
284190
-
Leu
TAA
[ENA]
¡û
>W1810573077
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
672562
672653
+
Leu
TAA
[ENA]
¡û
>W1810884741
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
1016817
1016908
+
Leu
TAA
[ENA]
¡û
>W1510016557
BBSJ01000035
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
10018
10109
+
Leu
TAA
[ENA]
¡û
>W10119616
ADWA01000038
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
18518
18427
-
Leu
TAA
[ENA]
¡û
>C11100605
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
2998399
2998308
-
Leu
TAA
[Ensembl]
¡û
>W1511390775
JSYI01000127
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
38475
38566
+
Leu
TAA
[ENA]
¡û
>W11125882
ADWA01000038
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
18518
18427
-
Leu
TAA
[ENA]
¡û
>W1511518958
JXYQ01000082
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
31994
32085
+
Leu
TAA
[ENA]
¡û
>W1610042813
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6986
7077
+
Leu
TAA
[ENA]
¡û
>W1610738336
LMOV01000024
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
352328
352237
-
Leu
TAA
[ENA]
¡û
>W1610753187
LNEG01000020
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
372
463
+
Leu
TAA
[ENA]
¡û
>W1610912973
LSIU01000623
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
204
295
+
Leu
TAA
[ENA]
¡û
>W1610915102
LSKS01000165
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
2494
2403
-
Leu
TAA
[ENA]
¡û
>W1710039973
BAZJ01000013
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
6986
7077
+
Leu
TAA
[ENA]
¡û
>W1710512053
FMZC01000002
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
49893
49802
-
Leu
TAA
[ENA]
¡û
>W1710551526
FOGD01000002
Betaproteobacteria
Giesbergeria anulus [FOGD]
111874
111965
+
Leu
TAA
[ENA]
¡û
>W1710559454
FOMQ01000011
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
102774
102683
-
Leu
TAA
[ENA]
¡û
>W1710561138
FONX01000011
Betaproteobacteria
Paracidovorax wautersii [FONX]
94664
94755
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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