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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.134549 (33 seq.)
>A171006934
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2994432
2994357
-
Val
GAC
-
¡û
>A171007156
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2694592
2694667
+
Val
GAC
-
¡û
>A171007273
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
999718
999793
+
Val
GAC
-
¡û
>WENV180364562
OBOA01033996
[OBOA] marine metagenome; Deep Chlorophyll Maximum
261
187
-
Val
GAC
[ENA]
¢þ
>WENV170009110
APHM01021337
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1122
1048
-
Val
GAC
[ENA]
¢þ
>WENV170009149
APHM01021452
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
110482
110407
-
Val
GAC
[ENA]
¢þ
>WENV170009169
APHM01021493
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
168346
168421
+
Val
GAC
[ENA]
¢þ
>WENV170009253
APHM01021913
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
8262
8187
-
Val
GAC
[ENA]
¢þ
>At0861
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2497536
2497610
+
Val
GAC
[Ensembl]
¡û
>At1722
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
1599658
1599584
-
Val
GAC
[Ensembl]
¡û
>WENV170661106
JXWU01105901
[JXWU] soil metagenome; rice field; organic control Plot
341
416
+
Val
GAC
[ENA]
¢þ
>WENV170681063
LFFM01000014
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5242
5316
+
Val
GAC
[ENA]
¢þ
>WENV170681656
LFFM01001903
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
12699
12773
+
Val
GAC
[ENA]
¢þ
>WENV170681661
LFFM01001917
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2802
2727
-
Val
GAC
[ENA]
¢þ
>WENV170682115
LFFM01006234
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1129
1207
+
Val
GAC
[ENA]
¢þ
>WENV170701842
LKMJ01000052
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3733
3808
+
Val
GAC
[ENA]
¢þ
>WENV170702463
LKMJ01002051
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
17513
17588
+
Val
GAC
[ENA]
¢þ
>WENV170703062
LKMJ01006129
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
810
735
-
Val
GAC
[ENA]
¢þ
>WENV170703340
LKMJ01009900
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7302
7378
+
Val
GAC
[ENA]
¢þ
>WENV170703395
LKMJ01010844
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5775
5698
-
Val
GAC
[ENA]
¢þ
>W1910229921
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
187841
187915
+
Val
GAC
[ENA]
¡û
>W1910230279
FOKW01000018
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
31615
31690
+
Val
GAC
[ENA]
¡û
>W1910230779
FOZK01000001
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
1230913
1230987
+
Val
GAC
[ENA]
¡û
>W1910575888
JROF01000022
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
59728
59654
-
Val
GAC
[ENA]
¡û
>W1911824352
QZWE01000017
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
43416
43341
-
Val
GAC
[ENA]
¡û
>W1610003656
AGCY01000547
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
8262
8187
-
Val
GAC
[ENA]
¡û
>W1610014445
AOLZ01000078
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
32832
32909
+
Val
GAC
[ENA]
¡û
>W1610014520
AOMB01000042
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
89295
89370
+
Val
GAC
[ENA]
¡û
>W1610019059
ARPW01000104
Euryarchaeota
halophilic archaeon J07HX5 [ARPW]
3163
3237
+
Val
GAC
[ENA]
¡û
>W1610019111
ARPX01000205
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
3489
3414
-
Val
GAC
[ENA]
¡û
>W1610019134
ARPY01000161
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
178841
178766
-
Val
GAC
[ENA]
¡û
>W1610682677
LKNH01000036
Euryarchaeota
Halobacteriaceae archaeon Tc-Br11_E2g27 [LKNH]
12699
12773
+
Val
GAC
[ENA]
¡û
>ENV005251
EF583989
Environmental sample from ENV division of INSDC
7111
7190
+
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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