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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13457 (92 seq.)
>W1710782878
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
733988
733900
-
Ser
CGA
[ENA]
¡û
>W1710801590
LJWZ01000061
Bacillota
Limosilactobacillus fermentum [LJWZ]
3700
3612
-
Ser
CGA
[ENA]
¡û
>W1711185537
LWNM01000040
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
2853
2941
+
Ser
CGA
[ENA]
¡û
>W1711487608
MKGE01000004
Bacillota
Limosilactobacillus fermentum [MKGE]
12139
12227
+
Ser
CGA
[ENA]
¡û
>W1712106928
NIWV01000035
Bacillota
Limosilactobacillus fermentum [NIWV]
16218
16306
+
Ser
CGA
[ENA]
¡û
>C171057916
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
1606107
1606195
+
Ser
CGA
-
¡û
>C171088319
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
230674
230586
-
Ser
CGA
-
¡û
>C171115642
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
758777
758865
+
Ser
CGA
-
¡û
>C171123296
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
1070341
1070253
-
Ser
CGA
-
¡û
>WENV180196006
OAZZ01014443
[OAZZ] human gut metagenome; faeces
348
260
-
Ser
CGA
[ENA]
¢þ
>WENV180334157
OBLF01005800
[OBLF] metagenome; feces
1734
1822
+
Ser
CGA
[ENA]
¢þ
>WENV180410700
OBUX01001648
[OBUX] human gut metagenome; faeces
988
900
-
Ser
CGA
[ENA]
¢þ
>WENV180442161
OBWW01014362
[OBWW] human gut metagenome; faeces
1018
930
-
Ser
CGA
[ENA]
¢þ
>W141092494
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
759532
759620
+
Ser
CGA
[ENA]
¡û
>W141094652
AVCT01000219
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
5860
5772
-
Ser
CGA
[ENA]
¡û
>WENV181473796
OGFC01000261
[OGFC] metagenome; Human gut stool
51780
51868
+
Ser
CGA
[ENA]
¢þ
>W141148203
AWXS01000065
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
3528
3616
+
Ser
CGA
[ENA]
¡û
>WENV181506348
OGGM01001033
[OGGM] metagenome; Human gut stool
12093
12181
+
Ser
CGA
[ENA]
¢þ
>WENV181506712
OGGN01008953
[OGGN] metagenome; Human gut stool
230
318
+
Ser
CGA
[ENA]
¢þ
>WENV181519112
OGHB01006452
[OGHB] metagenome; Human gut stool
2153
2241
+
Ser
CGA
[ENA]
¢þ
>WENV181553230
OGIQ01007819
[OGIQ] metagenome; Human gut stool
832
920
+
Ser
CGA
[ENA]
¢þ
>WENV181556318
OGIU01010078
[OGIU] metagenome; Human gut stool
1900
1988
+
Ser
CGA
[ENA]
¢þ
>WENV181564880
OGJH01055990
[OGJH] metagenome; Human gut stool
137
49
-
Ser
CGA
[ENA]
¢þ
>WENV181588141
OGKH01000799
[OGKH] metagenome; Human gut stool
212
124
-
Ser
CGA
[ENA]
¢þ
>W141180747
AYHA01000134
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
3257
3169
-
Ser
CGA
[ENA]
¡û
>WENV181933590
OGYS01010846
[OGYS] human gut metagenome; faeces
1908
1820
-
Ser
CGA
[ENA]
¢þ
>WENV182430943
OIIG01004386
[OIIG] human gut metagenome; human gut
2053
2141
+
Ser
CGA
[ENA]
¢þ
>W141244283
CAKF01000010
Bacillota
Limosilactobacillus ingluviei str. Autruche 4 [CAKF]
93807
93719
-
Ser
CGA
[ENA]
¡û
>WENV182493378
OISU01004775
[OISU] human gut metagenome; human gut
9
97
+
Ser
CGA
[ENA]
¢þ
>WENV182954459
OKWA01001667
[OKWA] human gut metagenome; human gut
7007
7095
+
Ser
CGA
[ENA]
¢þ
>C08006064
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
759261
759349
+
Ser
CGA
[Ensembl]
¡û
>WENV183022833
OLFR01010701
[OLFR] human gut metagenome; human gut
956
868
-
Ser
CGA
[ENA]
¢þ
>WENV183183044
OLPK01006223
[OLPK] human gut metagenome; faeces
2876
2964
+
Ser
CGA
[ENA]
¢þ
>C181004037
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
718859
718947
+
Ser
CGA
-
¡û
>C181054768
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
691173
691261
+
Ser
CGA
-
¡û
>C181196706
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
203991
204079
+
Ser
CGA
-
¡û
>C181226941
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
740727
740815
+
Ser
CGA
-
¡û
>C191012499
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
452212
452124
-
Ser
CGA
-
¡û
>C191105250
CP033371
Bacillota
Limosilactobacillus fermentum DR9 [CP033371]
216552
216464
-
Ser
CGA
-
¡û
>C191119237
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
2296266
2296178
-
Ser
CGA
-
¡û
>C191121367
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
703350
703438
+
Ser
CGA
-
¡û
>C191134238
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
1386350
1386262
-
Ser
CGA
-
¡û
>C191134295
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
706072
705984
-
Ser
CGA
-
¡û
>W09122632
ACGI01000078
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
432
344
-
Ser
CGA
[ENA]
¡û
>W141805341
JPKN01000059
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
6671
6759
+
Ser
CGA
[ENA]
¡û
>W1910181269
BJLV01000032
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
11815
11727
-
Ser
CGA
[ENA]
¡û
>W1910374069
FUHY01000057
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
9765
9853
+
Ser
CGA
[ENA]
¡û
>W1910374109
FUHZ01000072
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
1023
935
-
Ser
CGA
[ENA]
¡û
>W1910954318
NJPQ01000040
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
613
525
-
Ser
CGA
[ENA]
¡û
>W1911533699
OKQY01000015
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
41892
41980
+
Ser
CGA
[ENA]
¡û
>W1810058986
PDKX01000065
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
5850
5938
+
Ser
CGA
[ENA]
¡û
>W1810090602
PGGE01000047
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
3385
3297
-
Ser
CGA
[ENA]
¡û
>W1810090629
PGGI01000009
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
49192
49280
+
Ser
CGA
[ENA]
¡û
>W1810090689
PGGJ01000046
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
659
571
-
Ser
CGA
[ENA]
¡û
>W1810190825
PKKD01000017
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
256
168
-
Ser
CGA
[ENA]
¡û
>W1810196542
PNBB01000031
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
8330
8418
+
Ser
CGA
[ENA]
¡û
>W1810223777
POTQ01000018
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
42039
42127
+
Ser
CGA
[ENA]
¡û
>W1810297088
PTLW01000047
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
1737
1649
-
Ser
CGA
[ENA]
¡û
>W1810473339
QAHK01000015
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
519
431
-
Ser
CGA
[ENA]
¡û
>W1810489177
QAZV01000050
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
746
658
-
Ser
CGA
[ENA]
¡û
>W1810695507
QLNN01000031
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
43974
44062
+
Ser
CGA
[ENA]
¡û
>W1810705593
QMJL01000006
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
38011
38099
+
Ser
CGA
[ENA]
¡û
>W1810705672
QMJM01000082
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
793
705
-
Ser
CGA
[ENA]
¡û
>W1810811229
QRYA01000048
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
180
92
-
Ser
CGA
[ENA]
¡û
>W1810811844
QRYM01000009
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
4266
4354
+
Ser
CGA
[ENA]
¡û
>W1810814674
QSAL01000049
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
5509
5597
+
Ser
CGA
[ENA]
¡û
>C151084261
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
749459
749547
+
Ser
CGA
-
¡û
>W10102046
ACOH01000001
Bacillota
Limosilactobacillus coleohominis 101-4-CHN [ACOH]
74353
74441
+
Ser
CGA
[ENA]
¡û
>W10103410
ACQG01000070
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
37048
37136
+
Ser
CGA
[ENA]
¡û
>W1510021781
BCAH01000022
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
71040
70952
-
Ser
CGA
[ENA]
¡û
>W1510022538
CBZV010000014
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
8354
8442
+
Ser
CGA
[ENA]
¡û
>C10108364
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
759862
759950
+
Ser
CGA
[Ensembl]
¡û
>W11102202
ACOH01000001
Bacillota
Limosilactobacillus coleohominis 101-4-CHN [ACOH]
74353
74441
+
Ser
CGA
[ENA]
¡û
>W11103566
ACQG01000070
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
37048
37136
+
Ser
CGA
[ENA]
¡û
>W1511443756
JUTH01000061
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
247
335
+
Ser
CGA
[ENA]
¡û
>W1511567852
LAIK01000007
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
54255
54167
-
Ser
CGA
[ENA]
¡û
>W1511589477
LBDG01000003
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
99676
99764
+
Ser
CGA
[ENA]
¡û
>W1511589547
LBDH01000060
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
359
271
-
Ser
CGA
[ENA]
¡û
>C161077742
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1161973
1161885
-
Ser
CGA
-
¡û
>W1610035908
AZEW01000277
Bacillota
Limosilactobacillus coleohominis DSM 14060 [AZEW]
1887
1975
+
Ser
CGA
[ENA]
¡û
>W1610036573
AZFK01000005
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
64044
63956
-
Ser
CGA
[ENA]
¡û
>W1610083175
CBUR010000037
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
7201
7289
+
Ser
CGA
[ENA]
¡û
>C131016184
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
737585
737673
+
Ser
CGA
[Ensembl]
¡û
>W1610527952
JQAU01000047
Bacillota
Limosilactobacillus fermentum [JQAU]
1014
926
-
Ser
CGA
[ENA]
¡û
>W1610528193
JQBA01000005
Bacillota
Limosilactobacillus ingluviei [JQBA]
89008
89096
+
Ser
CGA
[ENA]
¡û
>W1610647386
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
733988
733900
-
Ser
CGA
[ENA]
¡û
>W1610665547
LJWZ01000061
Bacillota
Limosilactobacillus fermentum [LJWZ]
3700
3612
-
Ser
CGA
[ENA]
¡û
>W1710032947
AZEW01000277
Bacillota
Limosilactobacillus coleohominis DSM 14060 [AZEW]
1887
1975
+
Ser
CGA
[ENA]
¡û
>W1710033612
AZFK01000005
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
64044
63956
-
Ser
CGA
[ENA]
¡û
>W1710088295
CBUR010000037
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
7201
7289
+
Ser
CGA
[ENA]
¡û
>W1710629583
JQAU01000047
Bacillota
Limosilactobacillus fermentum [JQAU]
1014
926
-
Ser
CGA
[ENA]
¡û
>W1710629783
JQBA01000005
Bacillota
Limosilactobacillus ingluviei [JQBA]
89008
89096
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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