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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.134595 (19 seq.)
>W1711420789
MHXM01000061
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWC2_58_13 [MHXM]
5663
5740
+
Glu
TTC
[ENA]
¡û
>C171038997
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
3095695
3095772
+
Glu
TTC
-
¡û
>WENV180288198
OBIL01082963
[OBIL] metagenome; hydrothermal vent
78
1
-
Glu
TTC
[ENA]
¢þ
>WENV181214464
OFBY01000367
[OFBY] metagenome; hydrothermal vent
5043
4966
-
Glu
TTC
[ENA]
¢þ
>WENV181214970
OFBZ01000407
[OFBZ] metagenome; hydrothermal vent
69
146
+
Glu
TTC
[ENA]
¢þ
>WENV181215444
OFCA01000331
[OFCA] metagenome; hydrothermal vent
6390
6313
-
Glu
TTC
[ENA]
¢þ
>WENV170006629
AMWB02038241
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
4904
4981
+
Glu
TTC
[ENA]
¢þ
>WENV170007686
AMWB02150503
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
3493
3570
+
Glu
TTC
[ENA]
¢þ
>WENV170657573
JTFP01002380
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
780
703
-
Glu
TTC
[ENA]
¢þ
>WENV170657773
JTFP01017999
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
202
125
-
Glu
TTC
[ENA]
¢þ
>W1910230077
FOJJ01000012
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
170954
170877
-
Glu
TTC
[ENA]
¡û
>C151066498
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
2976118
2976041
-
Glu
TTC
[Ensembl]
¡û
>C151066499
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
2975931
2975854
-
Glu
TTC
[Ensembl]
¡û
>W1511480391
JWJD01000005
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus DSM 17813 [JWJD]
174322
174399
+
Glu
TTC
[ENA]
¡û
>C121011730
CP003360
Thermodesulfobacteriota
Desulfomonile tiedjei DSM 6799 [CP003360]
6036477
6036400
-
Glu
TTC
[Ensembl]
¡û
>C161082908
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
729979
730056
+
Glu
TTC
[Ensembl]
¡û
>W1710521957
FNGU01000006
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
56687
56610
-
Glu
TTC
[ENA]
¡û
>W1710588969
FQZT01000006
Thermodesulfobacteriota
Malonomonas rubra DSM 5091 [FQZT]
159053
159130
+
Glu
TTC
[ENA]
¡û
>W1710588989
FQZT01000024
Thermodesulfobacteriota
Malonomonas rubra DSM 5091 [FQZT]
4034
3957
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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