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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13460 (81 seq.)
>W1710862447
LMEJ01000014
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
459320
459412
+
Ser
GCT
[ENA]
¡û
>W1710863943
LMFM01000018
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
459178
459270
+
Ser
GCT
[ENA]
¡û
>W1710867158
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
528188
528280
+
Ser
GCT
[ENA]
¡û
>W1710867276
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
859175
859083
-
Ser
GCT
[ENA]
¡û
>W1710869794
LMJZ01000022
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
87396
87304
-
Ser
GCT
[ENA]
¡û
>W1710869950
LMKC01000005
Alphaproteobacteria
Sphingomonas sp. Leaf9 [LMKC]
425412
425504
+
Ser
GCT
[ENA]
¡û
>W1710870038
LMKE01000031
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
824
732
-
Ser
GCT
[ENA]
¡û
>W1710870135
LMKG01000005
Alphaproteobacteria
Sphingomonas sp. Leaf11 [LMKG]
425413
425505
+
Ser
GCT
[ENA]
¡û
>W1710870294
LMKJ01000014
Alphaproteobacteria
Sphingomonas sp. Leaf16 [LMKJ]
131109
131201
+
Ser
GCT
[ENA]
¡û
>W1710870544
LMKP01000012
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
427936
428028
+
Ser
GCT
[ENA]
¡û
>W1710870659
LMKR01000004
Alphaproteobacteria
Sphingomonas sp. Leaf23 [LMKR]
386678
386770
+
Ser
GCT
[ENA]
¡û
>W1710870706
LMKS01000020
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
87398
87306
-
Ser
GCT
[ENA]
¡û
>W1710870808
LMKU01000033
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
396892
396984
+
Ser
GCT
[ENA]
¡û
>W1710871005
LMKY01000009
Alphaproteobacteria
Sphingomonas sp. Leaf29 [LMKY]
80435
80343
-
Ser
GCT
[ENA]
¡û
>W1710871093
LMLA01000007
Alphaproteobacteria
Sphingomonas sp. Leaf32 [LMLA]
80364
80272
-
Ser
GCT
[ENA]
¡û
>W1710871308
LMLF01000004
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
252947
253039
+
Ser
GCT
[ENA]
¡û
>W1710871834
LMLN01000004
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
200262
200170
-
Ser
GCT
[ENA]
¡û
>W1710871946
LMLP01000021
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
51970
52062
+
Ser
GCT
[ENA]
¡û
>W1710877994
LMQO01000002
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
252934
253026
+
Ser
GCT
[ENA]
¡û
>W1711009240
LQQO01000015
Alphaproteobacteria
Sphingomonas hankookensis [LQQO]
81647
81555
-
Ser
GCT
[ENA]
¡û
>W1711072473
LSHQ01000012
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
9597
9689
+
Ser
GCT
[ENA]
¡û
>W1711072751
LSHX01000003
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
74497
74405
-
Ser
GCT
[ENA]
¡û
>W1711073020
LSIE01000006
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
23931
23839
-
Ser
GCT
[ENA]
¡û
>W1711074004
LSJC01000219
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
67030
66938
-
Ser
GCT
[ENA]
¡û
>W1711075613
LSKO01001518
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
5806
5714
-
Ser
GCT
[ENA]
¡û
>W1711075658
LSKP01000048
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
9505
9597
+
Ser
GCT
[ENA]
¡û
>W1711386358
MEFG01000015
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
147071
147163
+
Ser
GCT
[ENA]
¡û
>C171075902
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
204099
204007
-
Ser
GCT
-
¡û
>C171095076
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
2776370
2776278
-
Ser
GCT
-
¡û
>WENV180020668
FTCZ01008120
[FTCZ] metagenome; soil
10902
10993
+
Ser
GCT
[ENA]
¢þ
>WENV180026376
FTIT01007813
[FTIT] metagenome; soil
3
95
+
Ser
GCT
[ENA]
¢þ
>WENV180026399
FTIT01054274
[FTIT] metagenome; soil
4260
4168
-
Ser
GCT
[ENA]
¢þ
>WENV180292604
OBIV01532308
[OBIV] soil metagenome; Clay
209
117
-
Ser
GCT
[ENA]
¢þ
>WENV180693975
OCZS011822786
[OCZS] soil metagenome; soil
82
174
+
Ser
GCT
[ENA]
¢þ
>WENV181164650
OEIR01279971
[OEIR] soil metagenome; soil
45
137
+
Ser
GCT
[ENA]
¢þ
>WENV181226959
OFDN01000570
[OFDN] hot springs metagenome; Water
13242
13150
-
Ser
GCT
[ENA]
¢þ
>WENV183528984
ONZX01024581
[ONZX] human gut metagenome; human gut
232
324
+
Ser
GCT
[ENA]
¢þ
>WENV183676340
ORJL011611995
[ORJL] groundwater metagenome; groundwater
472
564
+
Ser
GCT
[ENA]
¢þ
>WENV183687522
ORMF011158664
[ORMF] groundwater metagenome; groundwater
510
602
+
Ser
GCT
[ENA]
¢þ
>WENV183731486
PJTT01000008
[PJTT] soil metagenome; Soil (2) enriched on wood chips
590611
590519
-
Ser
GCT
[ENA]
¢þ
>C181081621
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
3048274
3048182
-
Ser
GCT
-
¡û
>C191144178
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
2680892
2680800
-
Ser
GCT
-
¡û
>C141006100
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
4487418
4487510
+
Ser
GCT
[Ensembl]
¡û
>W1911411163
NWUF01000025
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
11788
11880
+
Ser
GCT
[ENA]
¡û
>W1911719034
QQWV01000031
Alphaproteobacteria
Sphingomonas sp. ABOLH ABOLH S-NIH.Pt17_1112 [QQWV]
6607
6515
-
Ser
GCT
[ENA]
¡û
>W1911765791
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
1229565
1229657
+
Ser
GCT
[ENA]
¡û
>W1810390273
PXYI01000002
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
374814
374722
-
Ser
GCT
[ENA]
¡û
>W1810538551
QDFY01000007
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
48210
48118
-
Ser
GCT
[ENA]
¡û
>SRA1015103
SRR023845.461883
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
221
129
-
Ser
GCT
[SRA]
>SRA1015654
SRR023846.146237
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
216
124
-
Ser
GCT
[SRA]
>C151073210
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
3771774
3771682
-
Ser
GCT
[Ensembl]
¡û
>W1510019418
BBWU01000029
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
26304
26212
-
Ser
GCT
[ENA]
¡û
>W1610071338
BCTZ01000014
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
121962
121870
-
Ser
GCT
[ENA]
¡û
>W1610724793
LMEJ01000014
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
459320
459412
+
Ser
GCT
[ENA]
¡û
>W1610726289
LMFM01000018
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
459178
459270
+
Ser
GCT
[ENA]
¡û
>W1610729504
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
528188
528280
+
Ser
GCT
[ENA]
¡û
>W1610729622
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
859175
859083
-
Ser
GCT
[ENA]
¡û
>W1610732140
LMJZ01000022
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
87396
87304
-
Ser
GCT
[ENA]
¡û
>W1610732296
LMKC01000005
Alphaproteobacteria
Sphingomonas sp. Leaf9 [LMKC]
425412
425504
+
Ser
GCT
[ENA]
¡û
>W1610732384
LMKE01000031
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
824
732
-
Ser
GCT
[ENA]
¡û
>W1610732481
LMKG01000005
Alphaproteobacteria
Sphingomonas sp. Leaf11 [LMKG]
425413
425505
+
Ser
GCT
[ENA]
¡û
>W1610732640
LMKJ01000014
Alphaproteobacteria
Sphingomonas sp. Leaf16 [LMKJ]
131109
131201
+
Ser
GCT
[ENA]
¡û
>W1610732890
LMKP01000012
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
427936
428028
+
Ser
GCT
[ENA]
¡û
>W1610733005
LMKR01000004
Alphaproteobacteria
Sphingomonas sp. Leaf23 [LMKR]
386678
386770
+
Ser
GCT
[ENA]
¡û
>W1610733052
LMKS01000020
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
87398
87306
-
Ser
GCT
[ENA]
¡û
>W1610733154
LMKU01000033
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
396892
396984
+
Ser
GCT
[ENA]
¡û
>W1610733351
LMKY01000009
Alphaproteobacteria
Sphingomonas sp. Leaf29 [LMKY]
80435
80343
-
Ser
GCT
[ENA]
¡û
>W1610733439
LMLA01000007
Alphaproteobacteria
Sphingomonas sp. Leaf32 [LMLA]
80364
80272
-
Ser
GCT
[ENA]
¡û
>W1610733654
LMLF01000004
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
252947
253039
+
Ser
GCT
[ENA]
¡û
>W1610734180
LMLN01000004
Alphaproteobacteria
Sphingomonas sp. Leaf62 [LMLN]
200262
200170
-
Ser
GCT
[ENA]
¡û
>W1610734292
LMLP01000021
Alphaproteobacteria
Sphingomonas sp. Leaf67 [LMLP]
51970
52062
+
Ser
GCT
[ENA]
¡û
>W1610740340
LMQO01000002
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
252934
253026
+
Ser
GCT
[ENA]
¡û
>W1610857760
LQQO01000015
Alphaproteobacteria
Sphingomonas hankookensis [LQQO]
81647
81555
-
Ser
GCT
[ENA]
¡û
>W1610911733
LSHQ01000012
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
9597
9689
+
Ser
GCT
[ENA]
¡û
>W1610912011
LSHX01000003
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
74497
74405
-
Ser
GCT
[ENA]
¡û
>W1610912325
LSIE01000006
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
23931
23839
-
Ser
GCT
[ENA]
¡û
>W1610913309
LSJC01000219
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
67030
66938
-
Ser
GCT
[ENA]
¡û
>W1610914918
LSKO01001518
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
5806
5714
-
Ser
GCT
[ENA]
¡û
>W1610914963
LSKP01000048
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
9505
9597
+
Ser
GCT
[ENA]
¡û
>W1710068703
BCTZ01000014
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
121962
121870
-
Ser
GCT
[ENA]
¡û
>W1710743477
LGVA01000025
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
57677
57585
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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