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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.135014 (51 seq.)
>W1710892857
LNEE01000037
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
64873
64789
-
Leu
GAG
[ENA]
¡û
>W1710944106
LOQE01000001
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
169620
169536
-
Leu
GAG
[ENA]
¡û
>W1711268806
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
522971
523055
+
Leu
GAG
[ENA]
¡û
>W131178092
ARLH01000085
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
54377
54293
-
Leu
GAG
[ENA]
¡û
>W1712110544
NJIH01000010
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
70768
70684
-
Leu
GAG
[ENA]
¡û
>C171103242
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
2547860
2547944
+
Leu
GAG
-
¡û
>WENV180103086
OAPA01001601
[OAPA] marine metagenome; ENVO:00002010
910
826
-
Leu
GAG
[ENA]
¢þ
>WENV180377459
OBON01026660
[OBON] marine metagenome; sea water
645
561
-
Leu
GAG
[ENA]
¢þ
>WENV181188266
OEOE01063229
[OEOE] activated sludge metagenome; Activated Sludge
155
71
-
Leu
GAG
[ENA]
¢þ
>WENV181368872
OFQN01002383
[OFQN] freshwater metagenome; Freshwater Lake
1314
1230
-
Leu
GAG
[ENA]
¢þ
>WENV181369859
OFQR01000858
[OFQR] freshwater metagenome; Freshwater Lake
868
952
+
Leu
GAG
[ENA]
¢þ
>WENV181370282
OFQS01002167
[OFQS] freshwater metagenome; Freshwater Lake
491
575
+
Leu
GAG
[ENA]
¢þ
>WENV181411007
OGCI01010407
[OGCI] hot springs metagenome; Hot spring water
1667
1583
-
Leu
GAG
[ENA]
¢þ
>W141139309
AWNL01000051
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
986
902
-
Leu
GAG
[ENA]
¡û
>WENV182578770
OJGP01002171
[OJGP] seawater metagenome; Sea water
2428
2344
-
Leu
GAG
[ENA]
¢þ
>W141277445
JAEP01000003
Betaproteobacteria
Bordetella petrii J51 [JAEP]
198068
197984
-
Leu
GAG
[ENA]
¡û
>WENV183741211
PJUF01057821
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
265
181
-
Leu
GAG
[ENA]
¢þ
>WENV170552229
CXWJ01047964
[CXWJ] wastewater metagenome; activated sludge
3039
2955
-
Leu
GAG
[ENA]
¢þ
>WENV170553887
CXWK01036215
[CXWK] wastewater metagenome; activated sludge
1368
1284
-
Leu
GAG
[ENA]
¢þ
>WENV170556309
CXWL01007021
[CXWL] groundwater metagenome; biofilm material
5395
5479
+
Leu
GAG
[ENA]
¢þ
>WENV170556397
CXWL01008091
[CXWL] groundwater metagenome; biofilm material
3147
3231
+
Leu
GAG
[ENA]
¢þ
>WENV170556517
CXWL01009875
[CXWL] groundwater metagenome; biofilm material
1426
1510
+
Leu
GAG
[ENA]
¢þ
>WENV170557127
CXWL01019718
[CXWL] groundwater metagenome; biofilm material
3292
3376
+
Leu
GAG
[ENA]
¢þ
>WENV170651620
JRYF01142889
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV170652826
JRYH01038928
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
959
1043
+
Leu
GAG
[ENA]
¢þ
>C181169423
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
2326071
2325987
-
Leu
GAG
-
¡û
>C191004286
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
1216701
1216785
+
Leu
GAG
-
¡û
>C191007515
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1185285
1185369
+
Leu
GAG
-
¡û
>C191012245
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3344392
3344308
-
Leu
GAG
-
¡û
>W1910228553
FNVK01000008
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
4797
4881
+
Leu
GAG
[ENA]
¡û
>W1910338824
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
707016
707100
+
Leu
GAG
[ENA]
¡û
>W1910890545
NEVI01000005
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
204868
204952
+
Leu
GAG
[ENA]
¡û
>W1911701428
QNUI01000019
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
16926
17010
+
Leu
GAG
[ENA]
¡û
>W1810273273
PSNX01000009
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
53807
53723
-
Leu
GAG
[ENA]
¡û
>W1810389558
PXXU01000037
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
31335
31251
-
Leu
GAG
[ENA]
¡û
>W1810696278
QLTD01000006
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
4709
4793
+
Leu
GAG
[ENA]
¡û
>SRA1052245
SRR035098.166590
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1052587
SRR035098.232658
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1053326
SRR035098.382825
454 Sequencing (SRP001819)
418
502
+
Leu
GAG
[SRA]
>W1610074137
BCWK01000017
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
18373
18457
+
Leu
GAG
[ENA]
¡û
>W1610085434
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
229427
229511
+
Leu
GAG
[ENA]
¡û
>W1610085578
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1610447539
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1610753123
LNEE01000037
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
64873
64789
-
Leu
GAG
[ENA]
¡û
>W1610800406
LOQE01000001
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
169620
169536
-
Leu
GAG
[ENA]
¡û
>W1611029618
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
522971
523055
+
Leu
GAG
[ENA]
¡û
>W1710071255
BCWK01000017
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
18373
18457
+
Leu
GAG
[ENA]
¡û
>W1710090023
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
229427
229511
+
Leu
GAG
[ENA]
¡û
>W1710090167
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1710447167
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1710553128
FOHI01000007
Betaproteobacteria
Nitrosospira multiformis [FOHI]
196377
196293
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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