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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.135293 (30 seq.)
>W1711055077
LRUI01000001
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
84566
84482
-
Tyr
GTA
[ENA]
¡û
>W1711055100
LRUI01000006
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
207
291
+
Tyr
GTA
[ENA]
¡û
>C171066097
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
3387127
3387043
-
Tyr
GTA
-
¡û
>C171066102
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
3297016
3296932
-
Tyr
GTA
-
¡û
>WENV182554703
OJCW01002390
[OJCW] seawater metagenome; Sea water
2990
2906
-
Tyr
GTA
[ENA]
¢þ
>WENV182559989
OJDR01000096
[OJDR] seawater metagenome; Sea water
36878
36962
+
Tyr
GTA
[ENA]
¢þ
>WENV182560473
OJDU01002585
[OJDU] seawater metagenome; Sea water
2153
2069
-
Tyr
GTA
[ENA]
¢þ
>WENV182563991
OJED01014208
[OJED] seawater metagenome; Sea water
517
433
-
Tyr
GTA
[ENA]
¢þ
>WENV182578773
OJGP01002246
[OJGP] seawater metagenome; Sea water
2179
2095
-
Tyr
GTA
[ENA]
¢þ
>WENV183053758
OLGQ01003302
[OLGQ] seawater metagenome; Sea water
135
219
+
Tyr
GTA
[ENA]
¢þ
>WENV183055750
OLHF01005140
[OLHF] seawater metagenome; Sea water
659
575
-
Tyr
GTA
[ENA]
¢þ
>WENV170698159
LGVF01274937
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
4661
4745
+
Tyr
GTA
[ENA]
¢þ
>WENV170782113
MAAC01008759
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
259
343
+
Tyr
GTA
[ENA]
¢þ
>WENV170782492
MAAC01010161
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4538
4622
+
Tyr
GTA
[ENA]
¢þ
>WENV170782543
MAAC01010197
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
39249
39165
-
Tyr
GTA
[ENA]
¢þ
>WENV170783651
MAAC01018329
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
526
442
-
Tyr
GTA
[ENA]
¢þ
>WENV170783965
MAAC01020176
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2280
2364
+
Tyr
GTA
[ENA]
¢þ
>C181136176
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
2791364
2791448
+
Tyr
GTA
-
¡û
>C191004471
AP018725
Gammaproteobacteria
Sulfuriflexus mobilis aks1 [AP018725]
2421024
2420940
-
Tyr
GTA
-
¡û
>C191130478
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
2219474
2219390
-
Tyr
GTA
-
¡û
>W1911770216
QXIO01000004
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
594
510
-
Tyr
GTA
[ENA]
¡û
>W1911770251
QXIO01000027
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
436
520
+
Tyr
GTA
[ENA]
¡û
>W1810887143
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
38356
38440
+
Tyr
GTA
[ENA]
¡û
>W1810887150
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
301031
301115
+
Tyr
GTA
[ENA]
¡û
>C161052218
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
40804
40888
+
Tyr
GTA
[Ensembl]
¡û
>W1610896123
LRUI01000001
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
84566
84482
-
Tyr
GTA
[ENA]
¡û
>W1610896146
LRUI01000006
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
207
291
+
Tyr
GTA
[ENA]
¡û
>W1710087386
BDQM01000068
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
3540
3456
-
Tyr
GTA
[ENA]
¡û
>W1710545256
FOBI01000010
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
456
372
-
Tyr
GTA
[ENA]
¡û
>W1710545273
FOBI01000027
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
36322
36238
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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