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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.135332 (54 seq.)
>W131160996
AQXE01000002
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
158262
158185
-
Glu
TTC
[ENA]
¡û
>W131236108
AUMA01000008
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
111418
111341
-
Glu
TTC
[ENA]
¡û
>W131221693
AUAR01000003
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
117222
117299
+
Glu
TTC
[ENA]
¡û
>W131221695
AUAR01000003
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
117382
117459
+
Glu
TTC
[ENA]
¡û
>W131221698
AUAR01000004
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
26609
26532
-
Glu
TTC
[ENA]
¡û
>WENV180285327
OBID01334122
[OBID] metagenome; sludge
95
18
-
Glu
TTC
[ENA]
¢þ
>WENV180582152
OCMO01004465
[OCMO] metagenome; diffuse fluid
328
405
+
Glu
TTC
[ENA]
¢þ
>WENV181207307
OFAY01010884
[OFAY] metagenome; hydrothermal vent
344
267
-
Glu
TTC
[ENA]
¢þ
>WENV181208258
OFBB01001523
[OFBB] metagenome; hydrothermal vent
366
289
-
Glu
TTC
[ENA]
¢þ
>WENV181208826
OFBC01010632
[OFBC] metagenome; hydrothermal vent
346
269
-
Glu
TTC
[ENA]
¢þ
>WENV183510961
OMHT01005722
[OMHT] human oral metagenome; human oral
225
148
-
Glu
TTC
[ENA]
¢þ
>WENV183706422
PDWI01004160
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
89
12
-
Glu
TTC
[ENA]
¢þ
>WENV183707725
PDWI01010227
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3460
3537
+
Glu
TTC
[ENA]
¢þ
>WENV183708719
PDWI01018977
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6841
6764
-
Glu
TTC
[ENA]
¢þ
>WENV183708957
PDWI01021823
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6184
6107
-
Glu
TTC
[ENA]
¢þ
>WENV183709476
PDWI01028724
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3428
3351
-
Glu
TTC
[ENA]
¢þ
>WENV183711566
PDWI01073252
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16
93
+
Glu
TTC
[ENA]
¢þ
>WENV183712253
PDWI01093606
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2238
2161
-
Glu
TTC
[ENA]
¢þ
>WENV183713380
PDWI01136151
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1648
1725
+
Glu
TTC
[ENA]
¢þ
>WENV183714640
PDWI01195481
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
345
422
+
Glu
TTC
[ENA]
¢þ
>WENV183718358
PDWJ01003547
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7207
7130
-
Glu
TTC
[ENA]
¢þ
>WENV183718538
PDWJ01004712
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11424
11347
-
Glu
TTC
[ENA]
¢þ
>WENV183720347
PDWJ01031980
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
295
372
+
Glu
TTC
[ENA]
¢þ
>WENV183720389
PDWJ01033312
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
74
-1
-
Glu
TTC
[ENA]
¢þ
>WENV183721557
PDWJ01074963
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1314
1237
-
Glu
TTC
[ENA]
¢þ
>WENV183721558
PDWJ01074963
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1189
1112
-
Glu
TTC
[ENA]
¢þ
>WENV170606392
FUWD010660721
[FUWD] metagenome; unknown
132
55
-
Glu
TTC
[ENA]
¢þ
>WENV170640577
JFJP01022520
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
396
319
-
Glu
TTC
[ENA]
¢þ
>WENV170657653
JTFP01006857
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
9207
9284
+
Glu
TTC
[ENA]
¢þ
>WENV170657830
JTFP01024370
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
10169
10092
-
Glu
TTC
[ENA]
¢þ
>WENV170658099
JTFP01054797
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
4357
4434
+
Glu
TTC
[ENA]
¢þ
>WENV170658637
JTFP01170030
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
269
192
-
Glu
TTC
[ENA]
¢þ
>WENV170658639
JTFP01170030
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
102
25
-
Glu
TTC
[ENA]
¢þ
>WENV170669173
LAHR01025546
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
78
1
-
Glu
TTC
[ENA]
¢þ
>WENV170686566
LFRM01151453
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
180
257
+
Glu
TTC
[ENA]
¢þ
>W09108771
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
494129
494206
+
Glu
TTC
[ENA]
¡û
>W09108776
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
844048
844125
+
Glu
TTC
[ENA]
¡û
>W09108778
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
844228
844305
+
Glu
TTC
[ENA]
¡û
>C10104956
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
2646778
2646855
+
Glu
TTC
[Ensembl]
¡û
>C10104961
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
2995694
2995771
+
Glu
TTC
[Ensembl]
¡û
>C10104963
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
2995874
2995951
+
Glu
TTC
[Ensembl]
¡û
>C161049503
CP013015
Thermodesulfobacteriota
Candidatus Desulfofervidus auxilii HS1 [CP013015]
1540937
1541014
+
Glu
TTC
[Ensembl]
¡û
>C161069033
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
2625264
2625341
+
Glu
TTC
[Ensembl]
¡û
>C161069053
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
1249090
1249013
-
Glu
TTC
[Ensembl]
¡û
>W1610046065
BBCB01000050
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
697
620
-
Glu
TTC
[ENA]
¡û
>W1610046070
BBCB01000069
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
2515
2592
+
Glu
TTC
[ENA]
¡û
>W1610046078
BBCB01000133
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4642
4719
+
Glu
TTC
[ENA]
¡û
>W1710042861
BBCB01000050
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
697
620
-
Glu
TTC
[ENA]
¡û
>W1710042866
BBCB01000069
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
2515
2592
+
Glu
TTC
[ENA]
¡û
>W1710042874
BBCB01000133
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4642
4719
+
Glu
TTC
[ENA]
¡û
>W1710524177
FNIN01000003
Thermodesulfobacteriota
Desulfonauticus submarinus [FNIN]
125350
125273
-
Glu
TTC
[ENA]
¡û
>W1710566359
FORX01000009
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
96894
96971
+
Glu
TTC
[ENA]
¡û
>W1710566361
FORX01000009
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
97075
97152
+
Glu
TTC
[ENA]
¡û
>W1710566363
FORX01000010
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
64737
64814
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK