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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.135380 (6 seq.)
>WENV180082197
MPMC02195634
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
957
1032
+
Pro
GGG
[ENA]
¢þ
>WENV170174936
CEOQ01386451
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
77
2
-
Pro
GGG
[ENA]
¢þ
>WENV170535429
CEWP01060535
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2008
1933
-
Pro
GGG
[ENA]
¢þ
>WENV170610782
FUWD012052469
[FUWD] metagenome; unknown
62
137
+
Pro
GGG
[ENA]
¢þ
>WENV170805729
MDSW01069680
[MDSW] marine metagenome; seawater
1224
1299
+
Pro
GGG
[ENA]
¢þ
>WENV067109
AACY023675792
Marine microbial communities from Global Ocean Sampling (GOS)
775
854
+
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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