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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13548 (11 seq.)
>WENV181228620
OFEH01000505
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
11599
11690
+
Ser
GCT
[ENA]
¢þ
>WENV181406980
OGCG01003450
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2129
2038
-
Ser
GCT
[ENA]
¢þ
>WENV181407582
OGCG01044259
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
96
5
-
Ser
GCT
[ENA]
¢þ
>C08005587
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1395953
1396044
+
Ser
GCT
[Ensembl]
¡û
>W09107134
ABFI01000011
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
13520
13429
-
Ser
GCT
[ENA]
¡û
>C151003658
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1380009
1380100
+
Ser
GCT
[Ensembl]
¡û
>C151003702
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1379877
1379968
+
Ser
GCT
[Ensembl]
¡û
>W10115199
ADJO01000004
Aquificota
Hydrogenobaculum sp. SN [ADJO]
74540
74631
+
Ser
GCT
[ENA]
¡û
>W11118785
ADJO01000004
Aquificota
Hydrogenobaculum sp. SN [ADJO]
74540
74631
+
Ser
GCT
[ENA]
¡û
>C131013398
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1380202
1380293
+
Ser
GCT
[Ensembl]
¡û
>C131013709
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1380164
1380255
+
Ser
GCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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