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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13563 (24 seq.)
>W1711411835
MGTP01000026
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_54_10 [MGTP]
4673
4765
+
Ser
GCT
[ENA]
¡û
>W1711414329
MGZJ01000024
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
18016
17924
-
Ser
GCT
[ENA]
¡û
>W1711414364
MGZK01000018
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
26975
27067
+
Ser
GCT
[ENA]
¡û
>W1711414464
MGZM01000147
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
14947
14855
-
Ser
GCT
[ENA]
¡û
>C010013
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
3959558
3959466
-
Ser
GCT
[Ensembl]
¡û
>C010226
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
348722
348814
+
Ser
GCT
[Ensembl]
¡û
>C017489
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
3213692
3213600
-
Ser
GCT
[Ensembl]
¡û
>w020979
AAVG01000074
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [AAVG]
1138
1230
+
Ser
GCT
[ENA]
¡û
>w018115
AASH01000046
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
20189
20281
+
Ser
GCT
[ENA]
¡û
>WENV181165207
OEIR01657741
[OEIR] soil metagenome; soil
34
126
+
Ser
GCT
[ENA]
¢þ
>WENV181231081
OFEK01009344
[OFEK] activated sludge metagenome; Anaerobic digester
1635
1543
-
Ser
GCT
[ENA]
¢þ
>WENV181286404
OFGV01034249
[OFGV] soil metagenome; Clay
470
378
-
Ser
GCT
[ENA]
¢þ
>C08005306
CP001089
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [CP001089]
3343751
3343843
+
Ser
GCT
[Ensembl]
¡û
>WENV170708360
LNAP01073089
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
877
969
+
Ser
GCT
[ENA]
¢þ
>W09100222
AAAS03000003
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
674382
674290
-
Ser
GCT
[ENA]
¡û
>W09103540
AAJH01000015
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
16024
16116
+
Ser
GCT
[ENA]
¡û
>C09106343
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
1302046
1302138
+
Ser
GCT
[Ensembl]
¡û
>W1810486146
QAXR01000002
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
330559
330467
-
Ser
GCT
[ENA]
¡û
>ENV09000818
ABSP01044002
Freshwater sediment metagenome lwMethane_C1
174
82
-
Ser
GCT
[ENA]
¡û
>W1510006452
BAZF01000017
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
89765
89857
+
Ser
GCT
[ENA]
¡û
>W121010736
AGJM01000024
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
49608
49516
-
Ser
GCT
[ENA]
¡û
>W1610046450
BBCJ01000033
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
48050
47958
-
Ser
GCT
[ENA]
¡û
>W1710043246
BBCJ01000033
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
48050
47958
-
Ser
GCT
[ENA]
¡û
>W1710600647
FUWR01000004
Thermodesulfobacteriota
Trichlorobacter thiogenes [FUWR]
141752
141660
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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