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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13616 (63 seq.)
>W131010735
AHYR01000003
Bacillota
Enterococcus dispar ATCC 51266 [AHYR]
83987
84077
+
Ser
GGA
[ENA]
¡û
>W131027644
AJAM01000016
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
3555
3645
+
Ser
GGA
[ENA]
¡û
>W131201131
ASVX01000002
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
606011
605921
-
Ser
GGA
[ENA]
¡û
>W131208697
ATIC01000043
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
76
166
+
Ser
GGA
[ENA]
¡û
>W131208738
ATID01000051
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
80
170
+
Ser
GGA
[ENA]
¡û
>W131209134
ATIM01000157
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
76
166
+
Ser
GGA
[ENA]
¡û
>W1711460318
MJED01000007
Bacillota
Enterococcus gallinarum [MJED]
174619
174529
-
Ser
GGA
[ENA]
¡û
>W1711460395
MJEF01000004
Bacillota
Enterococcus casseliflavus [MJEF]
173757
173667
-
Ser
GGA
[ENA]
¡û
>W1711460481
MJEG01000012
Bacillota
Enterococcus casseliflavus [MJEG]
148449
148359
-
Ser
GGA
[ENA]
¡û
>W1711738458
MUBE01000007
Bacillota
Enterococcus casseliflavus [MUBE]
314273
314183
-
Ser
GGA
[ENA]
¡û
>W1712067625
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
778534
778624
+
Ser
GGA
[ENA]
¡û
>W1712067759
NGLF01000001
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
2070236
2070326
+
Ser
GGA
[ENA]
¡û
>W1712067914
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
2446800
2446710
-
Ser
GGA
[ENA]
¡û
>W1712068036
NGLJ01000002
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
1222493
1222403
-
Ser
GGA
[ENA]
¡û
>W1712068056
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
2949016
2949106
+
Ser
GGA
[ENA]
¡û
>W1712068136
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
2384758
2384668
-
Ser
GGA
[ENA]
¡û
>W1712068215
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
2589673
2589763
+
Ser
GGA
[ENA]
¡û
>W1712069273
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
336238
336328
+
Ser
GGA
[ENA]
¡û
>W1712069796
NGMQ01000001
Bacillota
Enterococcus gallinarum [NGMQ]
2183911
2183821
-
Ser
GGA
[ENA]
¡û
>W1712097060
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
2799402
2799312
-
Ser
GGA
[ENA]
¡û
>WENV180128580
OATB01000379
[OATB] human gut metagenome; faeces
94
184
+
Ser
GGA
[ENA]
¢þ
>WENV180135315
OATK01021842
[OATK] human gut metagenome; faeces
715
805
+
Ser
GGA
[ENA]
¢þ
>WENV180153257
OAUR01020128
[OAUR] human gut metagenome; faeces
156
66
-
Ser
GGA
[ENA]
¢þ
>WENV180168151
OAVP01021302
[OAVP] human gut metagenome; faeces
156
66
-
Ser
GGA
[ENA]
¢þ
>WENV180449219
OBXF01007613
[OBXF] human gut metagenome; faeces
792
702
-
Ser
GGA
[ENA]
¢þ
>WENV180457626
OBXV01000004
[OBXV] human gut metagenome; faeces
98
188
+
Ser
GGA
[ENA]
¢þ
>WENV180497575
OCAE01005416
[OCAE] human gut metagenome; faeces
428
338
-
Ser
GGA
[ENA]
¢þ
>WENV180503811
OCAN01000068
[OCAN] human gut metagenome; faeces
188
278
+
Ser
GGA
[ENA]
¢þ
>WENV182601914
OJJJ01001559
[OJJJ] metagenome; faeces
173
263
+
Ser
GGA
[ENA]
¢þ
>WENV182949843
OKVQ01000610
[OKVQ] human gut metagenome; human gut
2907
2817
-
Ser
GGA
[ENA]
¢þ
>WENV170001411
AGFS01033648
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
321
411
+
Ser
GGA
[ENA]
¢þ
>WENV170541149
CXPK01000372
[CXPK] human gut metagenome genome assembly hA2, contig hA2_contig001157.; ENVO:feces
347
437
+
Ser
GGA
[ENA]
¢þ
>WENV170542234
CXPZ01001254
[CXPZ] human gut metagenome genome assembly hB5, contig hB5_contig003914.; ENVO:feces
533
443
-
Ser
GGA
[ENA]
¢þ
>WENV170542700
CXQH01000550
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
4374
4284
-
Ser
GGA
[ENA]
¢þ
>WENV170544462
CXRK01000410
[CXRK] human gut metagenome genome assembly hE7, contig hE7_contig003222.; ENVO:feces
4681
4591
-
Ser
GGA
[ENA]
¢þ
>WENV170545791
CXSH01002678
[CXSH] human gut metagenome genome assembly hG8, contig hG8_contig003709.; ENVO:feces
707
617
-
Ser
GGA
[ENA]
¢þ
>C181083343
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
2466428
2466518
+
Ser
GGA
-
¡û
>C181114759
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
1121692
1121782
+
Ser
GGA
-
¡û
>C191094161
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1839425
1839515
+
Ser
GGA
-
¡û
>C191110789
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
2028768
2028858
+
Ser
GGA
-
¡û
>W09115330
ACAH01000048
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
46
136
+
Ser
GGA
[ENA]
¡û
>W09115518
ACAL01000035
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
46
136
+
Ser
GGA
[ENA]
¡û
>W09115642
ACAO01000031
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
46
136
+
Ser
GGA
[ENA]
¡û
>W141734576
JNLR01000003
Bacillota
Enterococcus gallinarum [JNLR]
2058933
2058843
-
Ser
GGA
[ENA]
¡û
>W1910181713
BJMG01000029
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
14292
14202
-
Ser
GGA
[ENA]
¡û
>W1911238644
NSCY01000002
Bacillota
Enterococcus gallinarum 9402 [NSCY]
424
514
+
Ser
GGA
[ENA]
¡û
>W1810793560
QRJU01000012
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
111580
111490
-
Ser
GGA
[ENA]
¡û
>W1810798126
QRMZ01000009
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
242
332
+
Ser
GGA
[ENA]
¡û
>C151006864
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
2402240
2402150
-
Ser
GGA
[Ensembl]
¡û
>W1510079496
CDRD01002654
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
544
454
-
Ser
GGA
[ENA]
¡û
>W1510079506
CDRE01000263
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
2082
1992
-
Ser
GGA
[ENA]
¡û
>W1510079542
CDRE01001149
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
2818
2728
-
Ser
GGA
[ENA]
¡û
>WENV11101483
AGFS01033648
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
321
411
+
Ser
GGA
[ENA]
¡û
>W11151173
AEWT01000030
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
166796
166706
-
Ser
GGA
[ENA]
¡û
>C161066320
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
2147467
2147557
+
Ser
GGA
[Ensembl]
¡û
>W121077308
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
1422150
1422060
-
Ser
GGA
[ENA]
¡û
>W121086943
AKKS01000011
Bacillota
Enterococcus sp. C1 [AKKS]
67
157
+
Ser
GGA
[ENA]
¡û
>W1610066457
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
145330
145240
-
Ser
GGA
[ENA]
¡û
>WENV085415
BABC01005691
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
689
596
-
Ser
GGA
[ENA]
>W1710063795
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
145330
145240
-
Ser
GGA
[ENA]
¡û
>W1710520620
FNFS01000017
Bacillota
Enterococcus casseliflavus [FNFS]
77861
77771
-
Ser
GGA
[ENA]
¡û
>W1710559385
FOMP01000002
Bacillota
Enterococcus casseliflavus [FOMP]
528479
528389
-
Ser
GGA
[ENA]
¡û
>W1710659311
JXKN01000005
Bacillota
Enterococcus dispar [JXKN]
241037
240947
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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