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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.136216 (44 seq.)
>WENV180179549
OAWJ01002665
[OAWJ] human gut metagenome; faeces
5297
5374
+
Gln
TTG
[ENA]
¢þ
>WENV180453254
OBXM01000001
[OBXM] human gut metagenome; faeces
268151
268228
+
Gln
TTG
[ENA]
¢þ
>WENV180825011
ODJY01000006
[ODJY] human metagenome; G_DNA_Stool
252746
252823
+
Gln
TTG
[ENA]
¢þ
>WENV181462221
OGEN01001639
[OGEN] metagenome; Human gut stool
2918
2841
-
Gln
TTG
[ENA]
¢þ
>WENV181482234
OGFJ01001649
[OGFJ] metagenome; Human gut stool
11998
11921
-
Gln
TTG
[ENA]
¢þ
>WENV181506608
OGGN01000150
[OGGN] metagenome; Human gut stool
931
1008
+
Gln
TTG
[ENA]
¢þ
>WENV181518723
OGHB01000102
[OGHB] metagenome; Human gut stool
36277
36200
-
Gln
TTG
[ENA]
¢þ
>WENV181532386
OGHP01000019
[OGHP] metagenome; Human gut stool
29015
29092
+
Gln
TTG
[ENA]
¢þ
>WENV181536033
OGHV01001732
[OGHV] metagenome; Human gut stool
3614
3691
+
Gln
TTG
[ENA]
¢þ
>WENV181548131
OGIJ01037285
[OGIJ] metagenome; Human gut stool
699
776
+
Gln
TTG
[ENA]
¢þ
>WENV181560771
OGJC01004214
[OGJC] metagenome; Human gut stool
2034
2111
+
Gln
TTG
[ENA]
¢þ
>WENV181575543
OGJU01004318
[OGJU] metagenome; Human gut stool
1935
1858
-
Gln
TTG
[ENA]
¢þ
>WENV181579410
OGJZ01000045
[OGJZ] metagenome; Human gut stool
78312
78235
-
Gln
TTG
[ENA]
¢þ
>WENV181649589
OGNS01003859
[OGNS] metagenome; Human gut stool
926
849
-
Gln
TTG
[ENA]
¢þ
>WENV181807642
OGSQ01000008
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
180427
180350
-
Gln
TTG
[ENA]
¢þ
>WENV181818198
OGTS01000021
[OGTS] human gut metagenome; fecal sample 4 from infant 4
133424
133501
+
Gln
TTG
[ENA]
¢þ
>WENV182102614
OHHV01004499
[OHHV] human gut metagenome; feces
2256
2333
+
Gln
TTG
[ENA]
¢þ
>WENV182128003
OHJX01012409
[OHJX] human gut metagenome; feces
406
483
+
Gln
TTG
[ENA]
¢þ
>WENV182223228
OHQZ01008143
[OHQZ] human gut metagenome; feces
310
233
-
Gln
TTG
[ENA]
¢þ
>WENV182430304
OIIE01013719
[OIIE] human gut metagenome; human gut
183
106
-
Gln
TTG
[ENA]
¢þ
>WENV182432382
OIIN01001906
[OIIN] human gut metagenome; human gut
511
588
+
Gln
TTG
[ENA]
¢þ
>WENV182449341
OILR01001572
[OILR] human gut metagenome; human gut
1185
1108
-
Gln
TTG
[ENA]
¢þ
>WENV182457652
OINF01004311
[OINF] human gut metagenome; human gut
527
450
-
Gln
TTG
[ENA]
¢þ
>WENV182463733
OIOF01002244
[OIOF] human gut metagenome; human gut
798
721
-
Gln
TTG
[ENA]
¢þ
>WENV182709313
OJPB01000979
[OJPB] human gut metagenome; stool sample
10733
10656
-
Gln
TTG
[ENA]
¢þ
>WENV182715724
OJPI01011252
[OJPI] human gut metagenome; stool sample
387
310
-
Gln
TTG
[ENA]
¢þ
>WENV182965121
OKWR01030347
[OKWR] human gut metagenome; human gut
576
499
-
Gln
TTG
[ENA]
¢þ
>WENV182999727
OLCA01003857
[OLCA] human gut metagenome; human gut
491
414
-
Gln
TTG
[ENA]
¢þ
>WENV183003443
OLCS01000927
[OLCS] human gut metagenome; human gut
1306
1229
-
Gln
TTG
[ENA]
¢þ
>WENV183021535
OLFL01020330
[OLFL] human gut metagenome; human gut
124
201
+
Gln
TTG
[ENA]
¢þ
>WENV183046352
OLGF01000018
[OLGF] human gut metagenome; faeces
153252
153329
+
Gln
TTG
[ENA]
¢þ
>WENV183048291
OLGH01000022
[OLGH] human gut metagenome; faeces
82719
82796
+
Gln
TTG
[ENA]
¢þ
>WENV183091094
OLKF01023013
[OLKF] human gut metagenome; human gut
105
182
+
Gln
TTG
[ENA]
¢þ
>WENV183290140
OLSH01000002
[OLSH] human gut metagenome; faeces
191534
191611
+
Gln
TTG
[ENA]
¢þ
>WENV183526579
ONZV01001795
[ONZV] human gut metagenome; human gut
7731
7808
+
Gln
TTG
[ENA]
¢þ
>WENV183528754
ONZX01005580
[ONZX] human gut metagenome; human gut
2803
2726
-
Gln
TTG
[ENA]
¢þ
>WENV183540493
OOAK01000003
[OOAK] human gut metagenome; human gut
129761
129838
+
Gln
TTG
[ENA]
¢þ
>WENV183550637
OOBI01000001
[OOBI] human gut metagenome; human gut
231919
231842
-
Gln
TTG
[ENA]
¢þ
>WENV183557138
OOBP01000092
[OOBP] human gut metagenome; human gut
83783
83860
+
Gln
TTG
[ENA]
¢þ
>WENV183558080
OOBQ01001694
[OOBQ] human gut metagenome; human gut
544
467
-
Gln
TTG
[ENA]
¢þ
>WENV183561113
OOBV01000016
[OOBV] human gut metagenome; human gut
28941
29018
+
Gln
TTG
[ENA]
¢þ
>WENV183581892
OOCP01000328
[OOCP] human gut metagenome; human gut
33157
33080
-
Gln
TTG
[ENA]
¢þ
>WENV183631523
OOIF01000001
[OOIF] human gut metagenome; human gut
169433
169356
-
Gln
TTG
[ENA]
¢þ
>W121003138
AFBQ01000326
Betaproteobacteria
Sutterella parvirubra YIT 11816 [AFBQ]
7244
7321
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK