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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13634 (101 seq.)
>W1710793517
LJPL01000003
Bacillota
Streptococcus pasteurianus [LJPL]
111771
111859
+
Ser
CGA
[ENA]
¡û
>W1710989046
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
621420
621508
+
Ser
CGA
[ENA]
¡û
>W1711006290
LQOF01000015
Bacillota
Streptococcus gallolyticus [LQOF]
9680
9768
+
Ser
CGA
[ENA]
¡û
>W1711019324
LQXV01000131
Bacillota
Streptococcus gallolyticus [LQXV]
44853
44941
+
Ser
CGA
[ENA]
¡û
>W1711080512
LSRA01000081
Bacillota
Streptococcus pasteurianus [LSRA]
69745
69833
+
Ser
CGA
[ENA]
¡û
>W1711207033
LXFC01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
285027
285115
+
Ser
CGA
[ENA]
¡û
>W1711305583
MAMV01000011
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
885654
885742
+
Ser
CGA
[ENA]
¡û
>C171084873
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
2212816
2212904
+
Ser
CGA
-
¡û
>WENV180116391
OAQU01000218
[OAQU] human gut metagenome; ENVO:feces
2935
2847
-
Ser
CGA
[ENA]
¢þ
>WENV180116445
OAQV01000004
[OAQV] human gut metagenome; ENVO:feces
41314
41226
-
Ser
CGA
[ENA]
¢þ
>WENV180118830
OASD01001283
[OASD] human gut metagenome; ENVO:feces
4160
4248
+
Ser
CGA
[ENA]
¢þ
>WENV180198767
OBAD01008198
[OBAD] human gut metagenome; ENVO:feces
521
433
-
Ser
CGA
[ENA]
¢þ
>WENV180401594
OBRM01000185
[OBRM] human gut metagenome; ENVO:feces
2935
2847
-
Ser
CGA
[ENA]
¢þ
>WENV180401988
OBRN01027950
[OBRN] human gut metagenome; ENVO:feces
145
233
+
Ser
CGA
[ENA]
¢þ
>WENV180415607
OBVF01000021
[OBVF] human gut metagenome; faeces
57082
56994
-
Ser
CGA
[ENA]
¢þ
>WENV180597298
OCPK01035942
[OCPK] human gut metagenome; ENVO:feces
102
190
+
Ser
CGA
[ENA]
¢þ
>WENV181338201
OFMF01000940
[OFMF] human gut metagenome; human gut
19236
19324
+
Ser
CGA
[ENA]
¢þ
>WENV181438570
OGDJ01000528
[OGDJ] metagenome; Human gut stool
5608
5520
-
Ser
CGA
[ENA]
¢þ
>WENV181516288
OGGX01002658
[OGGX] metagenome; Human gut stool
221
133
-
Ser
CGA
[ENA]
¢þ
>WENV181527092
OGHK01000273
[OGHK] metagenome; Human gut stool
9616
9528
-
Ser
CGA
[ENA]
¢þ
>WENV181555197
OGIT01000098
[OGIT] metagenome; Human gut stool
7203
7291
+
Ser
CGA
[ENA]
¢þ
>WENV181557694
OGIW01000049
[OGIW] metagenome; Human gut stool
98196
98284
+
Ser
CGA
[ENA]
¢þ
>WENV181561478
OGJD01004145
[OGJD] metagenome; Human gut stool
3608
3696
+
Ser
CGA
[ENA]
¢þ
>WENV181567797
OGJK01000001
[OGJK] metagenome; Human gut stool
430623
430711
+
Ser
CGA
[ENA]
¢þ
>WENV181577553
OGJX01002390
[OGJX] metagenome; Human gut stool
7211
7299
+
Ser
CGA
[ENA]
¢þ
>WENV181579161
OGJY01025031
[OGJY] metagenome; Human gut stool
792
880
+
Ser
CGA
[ENA]
¢þ
>WENV181580039
OGJZ01003540
[OGJZ] metagenome; Human gut stool
94
6
-
Ser
CGA
[ENA]
¢þ
>W08006838
ABJK02000019
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
34387
34299
-
Ser
CGA
[ENA]
¡û
>WENV181879247
OGXF01000052
[OGXF] human gut metagenome; faeces
46106
46194
+
Ser
CGA
[ENA]
¢þ
>WENV181887264
OGXL01002629
[OGXL] human gut metagenome; faeces
5965
5877
-
Ser
CGA
[ENA]
¢þ
>WENV181889685
OGXN01000795
[OGXN] human gut metagenome; faeces
16134
16222
+
Ser
CGA
[ENA]
¢þ
>WENV181909253
OGYB01035973
[OGYB] human gut metagenome; faeces
739
827
+
Ser
CGA
[ENA]
¢þ
>WENV181935955
OGYU01059912
[OGYU] human gut metagenome; faeces
115
203
+
Ser
CGA
[ENA]
¢þ
>WENV181948601
OGZE01011388
[OGZE] human gut metagenome; faeces
804
892
+
Ser
CGA
[ENA]
¢þ
>WENV181964923
OGZS01000025
[OGZS] human gut metagenome; faeces
96579
96667
+
Ser
CGA
[ENA]
¢þ
>WENV181987247
OHAM01038210
[OHAM] human gut metagenome; faeces
589
677
+
Ser
CGA
[ENA]
¢þ
>WENV181997958
OHAU01009996
[OHAU] human gut metagenome; faeces
3152
3064
-
Ser
CGA
[ENA]
¢þ
>WENV182140626
OHKR01000001
[OHKR] human gut metagenome; feces
9004
8916
-
Ser
CGA
[ENA]
¢þ
>WENV182149108
OHLG01000003
[OHLG] human gut metagenome; feces
69815
69903
+
Ser
CGA
[ENA]
¢þ
>WENV182164467
OHMN01000369
[OHMN] human gut metagenome; faeces
34874
34786
-
Ser
CGA
[ENA]
¢þ
>WENV182185618
OHOG01000010
[OHOG] human gut metagenome; feces
8325
8237
-
Ser
CGA
[ENA]
¢þ
>WENV182230049
OHRK01000006
[OHRK] human gut metagenome; feces
11541
11453
-
Ser
CGA
[ENA]
¢þ
>WENV182394664
OIEJ01000183
[OIEJ] human gut metagenome; human gut
36084
36172
+
Ser
CGA
[ENA]
¢þ
>WENV182406212
OIEX01002022
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
1714
1802
+
Ser
CGA
[ENA]
¢þ
>WENV182413018
OIFX01000030
[OIFX] human gut metagenome; stool
67742
67654
-
Ser
CGA
[ENA]
¢þ
>W141261894
CCBC010000201
Bacillota
Streptococcus gallolyticus [CCBC]
5688
5600
-
Ser
CGA
[ENA]
¡û
>WENV182811262
OJXK01000006
[OJXK] human gut metagenome; human gut
11564
11652
+
Ser
CGA
[ENA]
¢þ
>WENV182814456
OJYK01000043
[OJYK] human gut metagenome; human gut
57071
57159
+
Ser
CGA
[ENA]
¢þ
>WENV182820199
OKAL01000005
[OKAL] human gut metagenome; human gut
56851
56939
+
Ser
CGA
[ENA]
¢þ
>WENV182842395
OKIE01000051
[OKIE] human gut metagenome; human gut
36889
36977
+
Ser
CGA
[ENA]
¢þ
>WENV182848163
OKKG01000010
[OKKG] human gut metagenome; human gut
56918
57006
+
Ser
CGA
[ENA]
¢þ
>WENV182854647
OKMW01000066
[OKMW] human gut metagenome; human gut
9306
9394
+
Ser
CGA
[ENA]
¢þ
>WENV182856219
OKNJ01000002
[OKNJ] human gut metagenome; human gut
28883
28971
+
Ser
CGA
[ENA]
¢þ
>WENV182862022
OKPJ01000120
[OKPJ] human gut metagenome; human gut
10284
10372
+
Ser
CGA
[ENA]
¢þ
>WENV182890280
OKSF01014019
[OKSF] human gut metagenome; faeces
677
765
+
Ser
CGA
[ENA]
¢þ
>WENV182954017
OKVZ01008691
[OKVZ] human gut metagenome; human gut
308
396
+
Ser
CGA
[ENA]
¢þ
>WENV183083356
OLJB01055196
[OLJB] human gut metagenome; human gut
82
170
+
Ser
CGA
[ENA]
¢þ
>WENV183602679
OODK01000081
[OODK] human gut metagenome; human gut
32109
32021
-
Ser
CGA
[ENA]
¢þ
>WENV183605767
OODN01000019
[OODN] human gut metagenome; human gut
58391
58303
-
Ser
CGA
[ENA]
¢þ
>WENV183608917
OODQ01000469
[OODQ] human gut metagenome; human gut
30064
30152
+
Ser
CGA
[ENA]
¢þ
>WENV183780893
PPYF01188136
[PPYF] human gut metagenome; stool from patient with Crohn's disease
39781
39869
+
Ser
CGA
[ENA]
¢þ
>C181211620
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
2213497
2213585
+
Ser
CGA
-
¡û
>C181214999
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
1976770
1976858
+
Ser
CGA
-
¡û
>C191166414
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
1941002
1941090
+
Ser
CGA
-
¡û
>W141727323
JNCV01000048
Bacillota
Streptococcus macedonicus [JNCV]
108619
108707
+
Ser
CGA
[ENA]
¡û
>W1910889496
NETH01000011
Bacillota
Streptococcus gallolyticus BI02 [NETH]
45970
46058
+
Ser
CGA
[ENA]
¡û
>W1810069558
PEBL01000007
Bacillota
Streptococcus macedonicus 211MA [PEBL]
290132
290220
+
Ser
CGA
[ENA]
¡û
>W1810069606
PEBM01000044
Bacillota
Streptococcus macedonicus 27MV [PEBM]
4943
4855
-
Ser
CGA
[ENA]
¡û
>W1810069641
PEBN01000012
Bacillota
Streptococcus macedonicus 19AS [PEBN]
8356
8268
-
Ser
CGA
[ENA]
¡û
>W1810188062
PKIB01000007
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
92171
92259
+
Ser
CGA
[ENA]
¡û
>W1810904632
QVEM01000004
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
157634
157722
+
Ser
CGA
[ENA]
¡û
>W1810905265
QVEY01000004
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
133142
133230
+
Ser
CGA
[ENA]
¡û
>W1810907442
QVHT01000005
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
64934
64846
-
Ser
CGA
[ENA]
¡û
>W1810907645
QVHX01000005
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
110646
110734
+
Ser
CGA
[ENA]
¡û
>W1510069668
CDEY01000018
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
32073
31985
-
Ser
CGA
[ENA]
¡û
>W10127566
AEEL01000024
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
91551
91639
+
Ser
CGA
[ENA]
¡û
>W10127597
AEEM01000019
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
191347
191435
+
Ser
CGA
[ENA]
¡û
>C10111596
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
2083024
2083112
+
Ser
CGA
[Ensembl]
¡û
>C11120598
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
2045128
2045216
+
Ser
CGA
[Ensembl]
¡û
>C11121189
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
1895193
1895281
+
Ser
CGA
[Ensembl]
¡û
>W1511447390
JUYN01000021
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
93229
93141
-
Ser
CGA
[ENA]
¡û
>W11135054
AEEL01000024
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
91551
91639
+
Ser
CGA
[ENA]
¡û
>W11135085
AEEM01000019
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
191347
191435
+
Ser
CGA
[ENA]
¡û
>W1511530620
JYKU01000014
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
215174
215262
+
Ser
CGA
[ENA]
¡û
>C121010358
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
1739267
1739355
+
Ser
CGA
[Ensembl]
¡û
>C121017498
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
2014533
2014621
+
Ser
CGA
[Ensembl]
¡û
>C121018013
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
1846492
1846580
+
Ser
CGA
[Ensembl]
¡û
>C161059332
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
140808
140720
-
Ser
CGA
[Ensembl]
¡û
>W1610514159
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
1762715
1762803
+
Ser
CGA
[ENA]
¡û
>W1610843922
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
621420
621508
+
Ser
CGA
[ENA]
¡û
>W1610856940
LQOF01000015
Bacillota
Streptococcus gallolyticus [LQOF]
9680
9768
+
Ser
CGA
[ENA]
¡û
>W1610867612
LQXV01000131
Bacillota
Streptococcus gallolyticus [LQXV]
44853
44941
+
Ser
CGA
[ENA]
¡û
>W1610919379
LSRA01000081
Bacillota
Streptococcus pasteurianus [LSRA]
69745
69833
+
Ser
CGA
[ENA]
¡û
>W1610995063
LXFC01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
285027
285115
+
Ser
CGA
[ENA]
¡û
>W1710520145
FNFJ01000003
Bacillota
Streptococcus gallolyticus [FNFJ]
90725
90637
-
Ser
CGA
[ENA]
¡û
>W1710521617
FNGN01000003
Bacillota
Streptococcus gallolyticus [FNGN]
91088
91000
-
Ser
CGA
[ENA]
¡û
>W1710538095
FNUH01000003
Bacillota
Streptococcus gallolyticus [FNUH]
58165
58077
-
Ser
CGA
[ENA]
¡û
>W1710545438
FOBM01000002
Bacillota
Streptococcus gallolyticus [FOBM]
468163
468251
+
Ser
CGA
[ENA]
¡û
>W1710551962
FOGM01000020
Bacillota
Streptococcus gallolyticus [FOGM]
17089
17001
-
Ser
CGA
[ENA]
¡û
>W1710558548
FOLZ01000002
Bacillota
Streptococcus gallolyticus [FOLZ]
578424
578512
+
Ser
CGA
[ENA]
¡û
>W1710578354
FPBN01000007
Bacillota
Streptococcus gallolyticus [FPBN]
288
200
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK