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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13663 (12 seq.)
>W131237911
AUSE01000057
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
30352
30261
-
Ser
GCT
[ENA]
¡û
>WENV181368459
OFQL01006389
[OFQL] freshwater metagenome; Freshwater Lake
721
632
-
Ser
GCT
[ENA]
¢þ
>WENV181369030
OFQN01011136
[OFQN] freshwater metagenome; Freshwater Lake
417
506
+
Ser
GCT
[ENA]
¢þ
>WENV181399431
OFSE01031726
[OFSE] wastewater metagenome; Exp Tend VB 50WW
786
695
-
Ser
GCT
[ENA]
¢þ
>WENV181400629
OFSF01014230
[OFSF] wastewater metagenome; Exp Tend VB 100WW
455
366
-
Ser
GCT
[ENA]
¢þ
>C181020897
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1289925
1289834
-
Ser
GCT
-
¡û
>C181020971
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1297343
1297252
-
Ser
GCT
-
¡û
>C181021043
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1279377
1279288
-
Ser
GCT
-
¡û
>C181021080
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1272798
1272709
-
Ser
GCT
-
¡û
>C181021155
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1276157
1276066
-
Ser
GCT
-
¡û
>C181021191
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1272830
1272741
-
Ser
GCT
-
¡û
>C181021305
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1215359
1215268
-
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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