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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.137702 (19 seq.)
>A171000203
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1385181
1385258
+
Gly
CCC
-
¡û
>A171004282
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1731075
1731152
+
Gly
CCC
-
¡û
>A171004437
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
794097
794174
+
Gly
TCC
-
¡û
>A171005872
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1110790
1110867
+
Gly
CCC
-
¡û
>A171005874
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1242738
1242815
+
Gly
TCC
-
¡û
>A171006482
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1985287
1985210
-
Gly
CCC
-
¡û
>A171006673
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
867467
867390
-
Gly
CCC
-
¡û
>A171007531
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
550698
550621
-
Gly
CCC
-
¡û
>A171007535
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
145681
145604
-
Gly
TCC
-
¡û
>At1890
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
127167
127090
-
Gly
TCC
[Ensembl]
¡û
>At1896
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
836701
836624
-
Gly
CCC
[Ensembl]
¡û
>WENV170675976
LDZQ01001547
[LDZQ] terrestrial metagenome; oil reservoir sample I2
11912
11989
+
Gly
CCC
[ENA]
¢þ
>W1910200311
FJMQ01000081
Euryarchaeota
Thermococcus litoralis [FJMQ]
28929
29006
+
Gly
CCC
[ENA]
¡û
>W1910230001
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
209676
209753
+
Gly
CCC
[ENA]
¡û
>W1610000727
ABSF01000012
Euryarchaeota
Thermococcus barophilus MP [ABSF]
31997
32074
+
Gly
CCC
[ENA]
¡û
>W1610000735
ABSF01000013
Euryarchaeota
Thermococcus barophilus MP [ABSF]
264945
264868
-
Gly
TCC
[ENA]
¡û
>W1610004915
AHVB01000025
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
35951
36028
+
Gly
CCC
[ENA]
¡û
>W1610005564
AKID01000012
Euryarchaeota
Thermococcus sp. PK [AKID]
1860
1783
-
Gly
CCC
[ENA]
¡û
>W1610045156
BBBE01000001
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
364999
364922
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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