This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.137745 (5 seq.)
>W1711422692
MIBH01000058
Spirochaetota
Spirochaetes bacterium RBG_13_51_14 [MIBH]
6493
6419
-
Pro
CGG
[ENA]
¡û
>W1711422729
MIBJ01000001
Spirochaetota
Spirochaetes bacterium RBG_16_49_21 [MIBJ]
98459
98533
+
Pro
CGG
[ENA]
¡û
>WENV180012861
FMSI01025923
[FMSI] soil metagenome; Soil
6502
6578
+
Pro
CGG
[ENA]
¢þ
>WENV181411388
OGCI01023709
[OGCI] hot springs metagenome; Hot spring water
1213
1289
+
Pro
CGG
[ENA]
¢þ
>WENV170979527
MTKZ01095224
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
600
526
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK