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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.138223 (28 seq.)
>W141067245
ARZY01000023
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
9815
9731
-
Tyr
GTA
[ENA]
¡û
>W141067265
ARZY01000067
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
377
293
-
Tyr
GTA
[ENA]
¡û
>WENV182589629
OJIE01000906
[OJIE] seawater metagenome; Sea water
475
391
-
Tyr
GTA
[ENA]
¢þ
>WENV170014356
AYRE01006045
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
246
162
-
Tyr
GTA
[ENA]
¢þ
>C181136236
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
65016
64932
-
Tyr
GTA
-
¡û
>C191083346
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
2965316
2965232
-
Tyr
GTA
-
¡û
>C191083381
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
967185
967101
-
Tyr
GTA
-
¡û
>C191083382
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
964828
964744
-
Tyr
GTA
-
¡û
>W1911618907
PPUZ01000046
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
106259
106175
-
Tyr
GTA
[ENA]
¡û
>W1911618908
PPUZ01000046
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
106151
106067
-
Tyr
GTA
[ENA]
¡û
>W1911618909
PPUZ01000046
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
106043
105959
-
Tyr
GTA
[ENA]
¡û
>W1911618925
PPUZ01000058
Gammaproteobacteria
Pseudoalteromonas rubra S1946 [PPUZ]
455
371
-
Tyr
GTA
[ENA]
¡û
>W1810249150
PQBZ01000002
Gammaproteobacteria
Pseudoalteromonas sp. T1lg23B [PQBZ]
102196
102280
+
Tyr
GTA
[ENA]
¡û
>W1810249181
PQBZ01000030
Gammaproteobacteria
Pseudoalteromonas sp. T1lg23B [PQBZ]
301615
301531
-
Tyr
GTA
[ENA]
¡û
>W1810249182
PQBZ01000030
Gammaproteobacteria
Pseudoalteromonas sp. T1lg23B [PQBZ]
301509
301425
-
Tyr
GTA
[ENA]
¡û
>W1810249183
PQBZ01000030
Gammaproteobacteria
Pseudoalteromonas sp. T1lg23B [PQBZ]
301407
301323
-
Tyr
GTA
[ENA]
¡û
>W1810471852
QAGM01000006
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
132425
132509
+
Tyr
GTA
[ENA]
¡û
>W1810471853
QAGM01000006
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
132564
132648
+
Tyr
GTA
[ENA]
¡û
>W1810471878
QAGM01000012
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
70053
69969
-
Tyr
GTA
[ENA]
¡û
>C161058098
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
536690
536774
+
Tyr
GTA
[Ensembl]
¡û
>W1610025184
AUXU01000099
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
7538
7454
-
Tyr
GTA
[ENA]
¡û
>W121024867
AHBZ01000006
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
68543
68459
-
Tyr
GTA
[ENA]
¡û
>W121024868
AHBZ01000006
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
68435
68351
-
Tyr
GTA
[ENA]
¡û
>W121024869
AHBZ01000006
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
68322
68238
-
Tyr
GTA
[ENA]
¡û
>W121024928
AHBZ01000020
Gammaproteobacteria
Pseudoalteromonas citrea NCIMB 1889 [AHBZ]
97828
97912
+
Tyr
GTA
[ENA]
¡û
>W121070188
AJWM01000094
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
2
86
+
Tyr
GTA
[ENA]
¡û
>W121070191
AJWM01000117
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
399
315
-
Tyr
GTA
[ENA]
¡û
>W1710021426
AUXU01000099
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
7538
7454
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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