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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139744 (30 seq.)
>W141042817
AMEV01000094
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
10374
10451
+
Val
TAC
[ENA]
¡û
>WENV180732356
ODGY01000223
[ODGY] human metagenome; G_DNA_Supragingival plaque
28262
28187
-
Val
TAC
[ENA]
¢þ
>WENV180759673
ODHY01074542
[ODHY] human metagenome; G_DNA_Buccal mucosa
79
154
+
Val
TAC
[ENA]
¢þ
>WENV180768433
ODIG01006913
[ODIG] human metagenome; G_DNA_Tongue dorsum
4586
4511
-
Val
TAC
[ENA]
¢þ
>WENV180804095
ODJG01000510
[ODJG] human metagenome; G_DNA_Supragingival plaque
23805
23730
-
Val
TAC
[ENA]
¢þ
>WENV180813928
ODJO01003896
[ODJO] human metagenome; G_DNA_Supragingival plaque
7526
7451
-
Val
TAC
[ENA]
¢þ
>WENV180831906
ODKC01000219
[ODKC] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180832822
ODKC01005151
[ODKC] human metagenome; G_DNA_Supragingival plaque
96
171
+
Val
TAC
[ENA]
¢þ
>WENV180834870
ODKE01000061
[ODKE] human metagenome; G_DNA_Supragingival plaque
58167
58092
-
Val
TAC
[ENA]
¢þ
>WENV180834958
ODKE01000222
[ODKE] human metagenome; G_DNA_Supragingival plaque
90
165
+
Val
TAC
[ENA]
¢þ
>WENV180843692
ODKN01008103
[ODKN] human metagenome; G_DNA_Supragingival plaque
3068
2993
-
Val
TAC
[ENA]
¢þ
>WENV180958005
ODUL01000115
[ODUL] human metagenome; G_DNA_Supragingival plaque
166
91
-
Val
TAC
[ENA]
¢þ
>WENV180980758
ODVE01001696
[ODVE] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV180980969
ODVE01004328
[ODVE] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180984166
ODVF01134886
[ODVF] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV181003261
ODVX01007682
[ODVX] human metagenome; G_DNA_Supragingival plaque
4031
3956
-
Val
TAC
[ENA]
¢þ
>WENV181059718
ODYM01007305
[ODYM] human metagenome; G_DNA_Tongue dorsum
2108
2033
-
Val
TAC
[ENA]
¢þ
>WENV181076270
OEAP01003151
[OEAP] human metagenome; G_DNA_Supragingival plaque
8368
8293
-
Val
TAC
[ENA]
¢þ
>WENV181076449
OEAP01005563
[OEAP] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV181182256
OEJV01004495
[OEJV] human metagenome; G_DNA_Supragingival plaque
1170
1245
+
Val
TAC
[ENA]
¢þ
>WENV182640208
OJLB01000759
[OJLB] metagenome; surface
100
175
+
Val
TAC
[ENA]
¢þ
>W09114683
ABZV01000003
Bacteroidota
Capnocytophaga sputigena Capno [ABZV]
46752
46675
-
Val
TAC
[ENA]
¡û
>C181055645
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
1948187
1948112
-
Val
TAC
-
¡û
>C181063732
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
57203
57128
-
Val
TAC
-
¡û
>C181063778
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
337120
337045
-
Val
TAC
-
¡û
>C181148130
CP027232
Bacteroidota
Capnocytophaga sp. oral taxon 864 F0512 [CP027232]
475326
475251
-
Val
TAC
-
¡û
>C191212298
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
50876
50801
-
Val
TAC
-
¡û
>W1910919097
NIBW01000002
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
563214
563139
-
Val
TAC
[ENA]
¡û
>W1810503602
QBKG01000011
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
24199
24124
-
Val
TAC
[ENA]
¡û
>C151095869
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
545229
545306
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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