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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139939 (86 seq.)
>A171001180
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
2176106
2176031
-
Val
GAC
-
¡û
>A171001181
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
2175985
2175911
-
Val
GAC
-
¡û
>A171001396
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
2328216
2328291
+
Val
GAC
-
¡û
>A171001397
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
2328336
2328411
+
Val
GAC
-
¡û
>A171002481
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
393167
393093
-
Val
GAC
-
¡û
>WENV170661061
JXWU01092089
[JXWU] soil metagenome; rice field; organic control Plot
156
231
+
Val
GAC
[ENA]
¢þ
>WENV170702021
LKMJ01000280
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
102
179
+
Val
GAC
[ENA]
¢þ
>WENV170702304
LKMJ01001234
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
78
1
-
Val
GAC
[ENA]
¢þ
>WENV170702352
LKMJ01001475
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3317
3394
+
Val
GAC
[ENA]
¢þ
>WENV170702914
LKMJ01004824
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
176
102
-
Val
GAC
[ENA]
¢þ
>WENV170703151
LKMJ01007253
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7543
7617
+
Val
GAC
[ENA]
¢þ
>WENV170703684
LKMJ01015427
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6381
6458
+
Val
GAC
[ENA]
¢þ
>WENV170703802
LKMJ01016939
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4149
4226
+
Val
GAC
[ENA]
¢þ
>WENV170704007
LKMJ01020610
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2074
2148
+
Val
GAC
[ENA]
¢þ
>WENV170704091
LKMJ01022431
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4078
4001
-
Val
GAC
[ENA]
¢þ
>W1910006906
BBMP01000011
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
101214
101289
+
Val
GAC
[ENA]
¡û
>W1910011022
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
2057422
2057348
-
Val
GAC
[ENA]
¡û
>W1910186221
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
50809
50884
+
Val
GAC
[ENA]
¡û
>W1910186222
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
50929
51004
+
Val
GAC
[ENA]
¡û
>W1910193566
CSTE01000006
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
103069
102994
-
Val
GAC
[ENA]
¡û
>W1910193567
CSTE01000006
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
102949
102874
-
Val
GAC
[ENA]
¡û
>W1910193750
CVRT01000078
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
22176
22102
-
Val
GAC
[ENA]
¡û
>W1910193780
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
406206
406280
+
Val
GAC
[ENA]
¡û
>W1910227012
FNHL01000002
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
822621
822546
-
Val
GAC
[ENA]
¡û
>W1910227064
FNIA01000017
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
76904
76829
-
Val
GAC
[ENA]
¡û
>W1910227091
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
533656
533581
-
Val
GAC
[ENA]
¡û
>W1910227138
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
34351
34425
+
Val
GAC
[ENA]
¡û
>W1910229333
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
180736
180662
-
Val
GAC
[ENA]
¡û
>W1910229788
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
86459
86534
+
Val
GAC
[ENA]
¡û
>W1910229898
FOIC01000007
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
96660
96735
+
Val
GAC
[ENA]
¡û
>W1910230458
FORO01000037
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
25965
26039
+
Val
GAC
[ENA]
¡û
>W1910230614
FOXI01000003
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
279391
279466
+
Val
GAC
[ENA]
¡û
>W1910230644
FOYN01000001
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
852698
852624
-
Val
GAC
[ENA]
¡û
>W1910230710
FOYS01000003
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
367584
367510
-
Val
GAC
[ENA]
¡û
>W1910230754
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
661103
661178
+
Val
GAC
[ENA]
¡û
>W1910281641
FQWV01000008
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
99032
98957
-
Val
GAC
[ENA]
¡û
>W1910340506
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
217416
217490
+
Val
GAC
[ENA]
¡û
>W1910340539
FTNR01000003
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
84809
84735
-
Val
GAC
[ENA]
¡û
>W1910572567
JMIP02000017
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
114350
114424
+
Val
GAC
[ENA]
¡û
>W1910891361
NEWI01000177
Euryarchaeota
Halorubrum sp. SD612 [NEWI]
308
233
-
Val
GAC
[ENA]
¡û
>W1910912010
NHOW01000094
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
50839
50914
+
Val
GAC
[ENA]
¡û
>W1910912040
NHOX01000016
Euryarchaeota
Halorubrum sp. Ib24 [NHOX]
27846
27772
-
Val
GAC
[ENA]
¡û
>W1910912509
NHPJ01000080
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
12576
12651
+
Val
GAC
[ENA]
¡û
>W1911591349
PKKI01000056
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
8827
8753
-
Val
GAC
[ENA]
¡û
>W1911630087
PSYY01000002
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
429005
428930
-
Val
GAC
[ENA]
¡û
>W1911630088
PSYY01000002
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
428885
428810
-
Val
GAC
[ENA]
¡û
>W1911655747
QEQJ01000002
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
266402
266327
-
Val
GAC
[ENA]
¡û
>W1911655748
QEQJ01000002
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
266283
266208
-
Val
GAC
[ENA]
¡û
>W1911682208
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
1325617
1325692
+
Val
GAC
[ENA]
¡û
>W1911709174
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2436363
2436289
-
Val
GAC
[ENA]
¡û
>W1911749424
QWGG01000012
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
86118
86192
+
Val
GAC
[ENA]
¡û
>W1911769994
QXIJ01000009
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
108522
108597
+
Val
GAC
[ENA]
¡û
>C151003911
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
1376302
1376377
+
Val
GAC
[Ensembl]
¡û
>W1610000755
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
2209388
2209463
+
Val
GAC
[ENA]
¡û
>W1610003682
AGCZ01000591
Euryarchaeota
halophilic archaeon J07HB67 [AGCZ]
2616
2541
-
Val
GAC
[ENA]
¡û
>W1610005345
AJRK01000418
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
21972
21897
-
Val
GAC
[ENA]
¡û
>W1610011499
ANPG01000044
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
134
209
+
Val
GAC
[ENA]
¡û
>W1610011703
AOHS01000007
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
136645
136722
+
Val
GAC
[ENA]
¡û
>W1610012147
AOIB01000039
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
59376
59301
-
Val
GAC
[ENA]
¡û
>W1610012621
AOIP01000034
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
9543
9466
-
Val
GAC
[ENA]
¡û
>W1610012937
AOJD01000021
Euryarchaeota
Halorubrum tebenquichense DSM 14210 [AOJD]
26017
26092
+
Val
GAC
[ENA]
¡û
>W1610013224
AOJJ01000086
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
7124
7049
-
Val
GAC
[ENA]
¡û
>W1610013327
AOJM01000006
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
119863
119938
+
Val
GAC
[ENA]
¡û
>W1610013486
AOLD01000044
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
80733
80808
+
Val
GAC
[ENA]
¡û
>W1610013487
AOLD01000044
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
80853
80927
+
Val
GAC
[ENA]
¡û
>W1610013727
AOLI01000019
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
387068
386991
-
Val
GAC
[ENA]
¡û
>W1610013728
AOLI01000019
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
386949
386875
-
Val
GAC
[ENA]
¡û
>W1610013922
AOLM01000012
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
125916
125991
+
Val
GAC
[ENA]
¡û
>W1610013923
AOLM01000012
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
126034
126109
+
Val
GAC
[ENA]
¡û
>W1610013962
AOLN01000006
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
37157
37082
-
Val
GAC
[ENA]
¡û
>W1610013963
AOLN01000006
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
37036
36961
-
Val
GAC
[ENA]
¡û
>W1610014689
AOMF01000166
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
102640
102563
-
Val
GAC
[ENA]
¡û
>W1610019035
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
841118
841044
-
Val
GAC
[ENA]
¡û
>W1610020302
ASGZ01000044
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
44444
44369
-
Val
GAC
[ENA]
¡û
>W1610083000
CBMA010000054
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
156216
156142
-
Val
GAC
[ENA]
¡û
>W1610682306
LKMR01000139
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
2074
2148
+
Val
GAC
[ENA]
¡û
>W1610682538
LKNC01000024
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
16034
15957
-
Val
GAC
[ENA]
¡û
>W1610779633
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
2516994
2516920
-
Val
GAC
[ENA]
¡û
>W1610784303
LOEP01000027
Euryarchaeota
Haloferax sp. Q22 [LOEP]
126782
126707
-
Val
GAC
[ENA]
¡û
>W1610784304
LOEP01000027
Euryarchaeota
Haloferax sp. Q22 [LOEP]
126662
126587
-
Val
GAC
[ENA]
¡û
>W1610799840
LOPV01000140
Euryarchaeota
Haloferax profundi SB29 [LOPV]
25290
25367
+
Val
GAC
[ENA]
¡û
>W1610799841
LOPV01000140
Euryarchaeota
Haloferax profundi SB29 [LOPV]
25409
25486
+
Val
GAC
[ENA]
¡û
>W1610799877
LOPW01000014
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
136850
136925
+
Val
GAC
[ENA]
¡û
>W1610799878
LOPW01000014
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
136970
137044
+
Val
GAC
[ENA]
¡û
>W1610925036
LTAZ01000004
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
64505
64582
+
Val
GAC
[ENA]
¡û
>W1630000770
ATCR02000009
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
423342
423267
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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