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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140843 (13 seq.)
>W1712017623
NETF01000182
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
74575
74657
+
Leu
TAG
[ENA]
¡û
>W141231490
BAUB01000034
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
3611
3693
+
Leu
TAG
[ENA]
¡û
>W141234755
BAWS01000009
Cyanobacteriota
Picosynechococcus sp. NKBG042902 NKBG 042902 [BAWS]
28816
28898
+
Leu
TAG
[ENA]
¡û
>C08010873
CP000951
Cyanobacteriota
Picosynechococcus sp. PCC 7002 PCC 7002; ATCC 27264 [CP000951]
1744982
1744900
-
Leu
TAG
[Ensembl]
¡û
>WENV170822441
MDSY01040033
[MDSY] marine metagenome; seawater
122835
122915
+
Leu
TAG
[ENA]
¢þ
>C181003877
AP017959
Cyanobacteriota
[Synechococcus] sp. NIES-970 [AP017959]
1806643
1806561
-
Leu
TAG
-
¡û
>W1810047911
PCGE01000061
Cyanobacteriota
Synechococcus sp. BDU 130192 [PCGE]
23710
23628
-
Leu
TAG
[ENA]
¡û
>C161064005
CP013998
Cyanobacteriota
Picosynechococcus sp. PCC 73109 [CP013998]
1770696
1770614
-
Leu
TAG
-
¡û
>C161097326
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
1716572
1716487
-
Leu
TAG
[Ensembl]
¡û
>C161097370
CP016477
Cyanobacteriota
Picosynechococcus sp. PCC 7117 [CP016477]
1785522
1785440
-
Leu
TAG
[Ensembl]
¡û
>C161097411
CP016483
Cyanobacteriota
Picosynechococcus sp. PCC 8807 [CP016483]
1754998
1754916
-
Leu
TAG
-
¡û
>W1710608969
FXBO01000001
Cyanobacteriota
Picosynechococcus sp. OG1 OG1 [FXBO]
31546
31628
+
Leu
TAG
[ENA]
¡û
>W1710609618
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
2490832
2490914
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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