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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140902 (59 seq.)
>A171001141
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3114213
3114133
-
Ser
GGA
-
¡û
>A171003039
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
725679
725759
+
Ser
GGA
-
¡û
>A171003098
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2274449
2274529
+
Ser
GGA
-
¡û
>A171003181
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1915346
1915266
-
Ser
GGA
-
¡û
>A171003479
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2109933
2110013
+
Ser
GGA
-
¡û
>A171004144
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2214574
2214654
+
Ser
GGA
-
¡û
>A171006938
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1578083
1578003
-
Ser
GGA
-
¡û
>A171006981
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2073330
2073250
-
Ser
GGA
-
¡û
>WENV170680196
LFCJ01005707
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3332
3412
+
Ser
GGA
[ENA]
¢þ
>WENV170680398
LFCJ01010447
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6157
6237
+
Ser
GGA
[ENA]
¢þ
>WENV170680518
LFCJ01013253
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
638
718
+
Ser
GGA
[ENA]
¢þ
>WENV170682258
LFFM01008070
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
651
731
+
Ser
GGA
[ENA]
¢þ
>WENV170704037
LKMJ01021237
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
672
752
+
Ser
GGA
[ENA]
¢þ
>W1910226669
FMZP01000001
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
118316
118396
+
Ser
GGA
[ENA]
¡û
>W1910226896
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
353382
353462
+
Ser
GGA
[ENA]
¡û
>W1910229329
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1028152
1028072
-
Ser
GGA
[ENA]
¡û
>W1910229819
FOFD01000004
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
97736
97656
-
Ser
GGA
[ENA]
¡û
>W1910229948
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
386349
386269
-
Ser
GGA
[ENA]
¡û
>W1910230448
FORO01000016
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
1848
1928
+
Ser
GGA
[ENA]
¡û
>W1910230828
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
619374
619454
+
Ser
GGA
[ENA]
¡û
>W1910340503
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
484553
484473
-
Ser
GGA
[ENA]
¡û
>W1910568514
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
473327
473407
+
Ser
GGA
[ENA]
¡û
>W1910569078
JHUT02000007
Euryarchaeota
Natrinema mahii H13 [JHUT]
208308
208388
+
Ser
GGA
[ENA]
¡û
>W1910572574
JMIP02000019
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
76734
76814
+
Ser
GGA
[ENA]
¡û
>W1910572699
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
228864
228784
-
Ser
GGA
[ENA]
¡û
>W1910583016
JXAN01000047
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
5717
5637
-
Ser
GGA
[ENA]
¡û
>W1910646107
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
516905
516985
+
Ser
GGA
[ENA]
¡û
>W1910657555
MASN01000018
Euryarchaeota
Natrialba sp. SSL1 [MASN]
301260
301180
-
Ser
GGA
[ENA]
¡û
>W1910826113
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
764803
764883
+
Ser
GGA
[ENA]
¡û
>W1911433997
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2484246
2484166
-
Ser
GGA
[ENA]
¡û
>W1911572216
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2184385
2184465
+
Ser
GGA
[ENA]
¡û
>W1911591336
PKKI01000020
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
76792
76712
-
Ser
GGA
[ENA]
¡û
>W1911717979
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
678628
678548
-
Ser
GGA
[ENA]
¡û
>W1911749398
QWGG01000002
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
144731
144812
+
Ser
GGA
[ENA]
¡û
>W1610001047
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
214336
214416
+
Ser
GGA
[ENA]
¡û
>W1610004051
AGFZ01000045
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
12785
12705
-
Ser
GGA
[ENA]
¡û
>W1610004095
AGIM01000006
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
166808
166888
+
Ser
GGA
[ENA]
¡û
>W1610004131
AGIN01000006
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
28138
28058
-
Ser
GGA
[ENA]
¡û
>W1610005379
AJVG01000013
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
58566
58486
-
Ser
GGA
[ENA]
¡û
>W1610011912
AOHW01000030
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
47765
47684
-
Ser
GGA
[ENA]
¡û
>W1610012051
AOHZ01000075
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
52414
52494
+
Ser
GGA
[ENA]
¡û
>W1610012066
AOIA01000023
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
16766
16846
+
Ser
GGA
[ENA]
¡û
>W1610012172
AOIC01000071
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
32586
32666
+
Ser
GGA
[ENA]
¡û
>W1610012203
AOID01000026
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
155143
155223
+
Ser
GGA
[ENA]
¡û
>W1610012250
AOIE01000066
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
18277
18197
-
Ser
GGA
[ENA]
¡û
>W1610012305
AOII01000069
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
27822
27742
-
Ser
GGA
[ENA]
¡û
>W1610012338
AOIJ01000043
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
63078
62998
-
Ser
GGA
[ENA]
¡û
>W1610012379
AOIK01000024
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
24282
24362
+
Ser
GGA
[ENA]
¡û
>W1610012421
AOIL01000017
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
133436
133517
+
Ser
GGA
[ENA]
¡û
>W1610012469
AOIM01000017
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
47291
47211
-
Ser
GGA
[ENA]
¡û
>W1610012508
AOIN01000043
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
56631
56711
+
Ser
GGA
[ENA]
¡û
>W1610012541
AOIO01000014
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
7882
7801
-
Ser
GGA
[ENA]
¡û
>W1610012613
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
27630
27549
-
Ser
GGA
[ENA]
¡û
>W1610012702
AOIR01000064
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
82892
82972
+
Ser
GGA
[ENA]
¡û
>W1610012724
AOIS01000030
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
70266
70347
+
Ser
GGA
[ENA]
¡û
>W1610014406
AOLZ01000013
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
71056
71136
+
Ser
GGA
[ENA]
¡û
>W1610019030
ARPH01000005
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
583104
583023
-
Ser
GGA
[ENA]
¡û
>W1610046858
BBCV01000030
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
45362
45442
+
Ser
GGA
[ENA]
¡û
>W1610682207
LKMM01000157
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
6157
6237
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK