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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141174 (27 seq.)
>w023460
AAXW01000026
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
10478
10393
-
Leu
TAG
[ENA]
¡û
>w003593
AADV02000001
Cyanobacteriota
Crocosphaera watsonii WH 8501 [AADV]
601908
601993
+
Leu
TAG
[ENA]
¡û
>W141051297
AMZV01000018
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
244408
244488
+
Leu
TAG
[ENA]
¡û
>WENV181414175
OGCL01000075
[OGCL] hot springs metagenome; Hot spring water
35765
35683
-
Leu
TAG
[ENA]
¢þ
>W141246996
CAQK01000042
Cyanobacteriota
Crocosphaera watsonii WH 8502 [CAQK]
7883
7964
+
Leu
TAG
[ENA]
¡û
>W141247034
CAQL01000053
Cyanobacteriota
Crocosphaera watsonii WH 0005 [CAQL]
7745
7826
+
Leu
TAG
[ENA]
¡û
>W141247094
CAQM01000582
Cyanobacteriota
Crocosphaera watsonii WH 0401 [CAQM]
8115
8196
+
Leu
TAG
[ENA]
¡û
>W141247142
CAQN01001252
Cyanobacteriota
Crocosphaera watsonii WH 0402 [CAQN]
711
630
-
Leu
TAG
[ENA]
¡û
>WENV182575040
OJFS01025598
[OJFS] seawater metagenome; Sea water
611
691
+
Leu
TAG
[ENA]
¢þ
>C08003993
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
290689
290607
-
Leu
TAG
[Ensembl]
¡û
>WENV170336231
CESZ01203405
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
456
376
-
Leu
TAG
[ENA]
¢þ
>WENV170640229
JFJP01015051
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3989
4069
+
Leu
TAG
[ENA]
¢þ
>C181001777
AP017375
Cyanobacteriota
Stanieria sp. NIES-3757 [AP017375]
4177199
4177118
-
Leu
TAG
-
¡û
>C181160831
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
633304
633384
+
Leu
TAG
-
¡û
>W141810147
JPSP01000002
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa thalassa isolate SIO64986 [JPSP]
121182
121102
-
Leu
TAG
[ENA]
¡û
>W1910018074
BDQK01000014
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
100854
100934
+
Leu
TAG
[ENA]
¡û
>W1910018092
BDQL01000004
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
54050
54130
+
Leu
TAG
[ENA]
¡û
>W1910695502
MDVL01000595
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
1790
1710
-
Leu
TAG
[ENA]
¡û
>W1810271968
PRLH01000053
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
18090
18008
-
Leu
TAG
[ENA]
¡û
>C11122284
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
633304
633384
+
Leu
TAG
[Ensembl]
¡û
>W11181471
AGJC01000009
Cyanobacteriota
Crocosphaera subtropica ATCC 51472 [AGJC]
114213
114131
-
Leu
TAG
[ENA]
¡û
>C121000594
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
633406
633486
+
Leu
TAG
[Ensembl]
¡û
>C121000633
AP012277
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-N [AP012277]
633394
633474
+
Leu
TAG
[Ensembl]
¡û
>C161046043
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
633406
633486
+
Leu
TAG
-
¡û
>W121002162
AESD01000088
Cyanobacteriota
Crocosphaera watsonii WH 0003 [AESD]
7754
7835
+
Leu
TAG
[ENA]
¡û
>C131005042
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
345516
345432
-
Leu
TAG
[Ensembl]
¡û
>C131010353
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
396798
396881
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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