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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141501 (53 seq.)
>W1711096456
LTHT01000162
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
27153
27236
+
Ser
TGA
[ENA]
¡û
>WENV180117592
OARK01025532
[OARK] human gut metagenome; ENVO:feces
102
19
-
Ser
TGA
[ENA]
¢þ
>WENV181047509
ODXZ01011374
[ODXZ] human metagenome; G_DNA_Stool
573
656
+
Ser
TGA
[ENA]
¢þ
>WENV181340912
OFMH01003132
[OFMH] human gut metagenome; human gut
2402
2319
-
Ser
TGA
[ENA]
¢þ
>WENV181363233
OFOU01000015
[OFOU] human gut metagenome; human gut
38991
39074
+
Ser
TGA
[ENA]
¢þ
>WENV181428351
OGCV01000196
[OGCV] metagenome; Human gut stool
23567
23650
+
Ser
TGA
[ENA]
¢þ
>WENV181453466
OGEB01014761
[OGEB] metagenome; Human gut stool
920
1003
+
Ser
TGA
[ENA]
¢þ
>WENV181458506
OGEK01000039
[OGEK] metagenome; Human gut stool
103888
103805
-
Ser
TGA
[ENA]
¢þ
>WENV181461012
OGEM01000174
[OGEM] metagenome; Human gut stool
147
64
-
Ser
TGA
[ENA]
¢þ
>WENV181474052
OGFC01001381
[OGFC] metagenome; Human gut stool
2668
2585
-
Ser
TGA
[ENA]
¢þ
>WENV181507638
OGGP01000149
[OGGP] metagenome; Human gut stool
49415
49332
-
Ser
TGA
[ENA]
¢þ
>WENV181518071
OGHA01000878
[OGHA] metagenome; Human gut stool
4476
4393
-
Ser
TGA
[ENA]
¢þ
>WENV181539986
OGIA01001524
[OGIA] metagenome; Human gut stool
8027
7944
-
Ser
TGA
[ENA]
¢þ
>WENV181557861
OGIW01000324
[OGIW] metagenome; Human gut stool
37412
37495
+
Ser
TGA
[ENA]
¢þ
>WENV181560423
OGJC01000177
[OGJC] metagenome; Human gut stool
34698
34781
+
Ser
TGA
[ENA]
¢þ
>WENV181561308
OGJD01001052
[OGJD] metagenome; Human gut stool
17341
17424
+
Ser
TGA
[ENA]
¢þ
>WENV181579568
OGJZ01000278
[OGJZ] metagenome; Human gut stool
27544
27461
-
Ser
TGA
[ENA]
¢þ
>WENV181627667
OGMN01002722
[OGMN] metagenome; Human gut stool
7261
7344
+
Ser
TGA
[ENA]
¢þ
>W141171013
AXZF01000209
Fusobacteriota
Cetobacterium somerae ATCC BAA-474 [AXZF]
203
286
+
Ser
TGA
[ENA]
¡û
>WENV181794590
OGRS01001044
[OGRS] human gut metagenome; faeces
3700
3783
+
Ser
TGA
[ENA]
¢þ
>WENV181878203
OGXE01001542
[OGXE] human gut metagenome; faeces
3697
3780
+
Ser
TGA
[ENA]
¢þ
>WENV181891946
OGXP01000131
[OGXP] human gut metagenome; faeces
23326
23409
+
Ser
TGA
[ENA]
¢þ
>WENV181900579
OGXV01019284
[OGXV] human gut metagenome; faeces
161
78
-
Ser
TGA
[ENA]
¢þ
>WENV181948147
OGZE01000550
[OGZE] human gut metagenome; faeces
10694
10611
-
Ser
TGA
[ENA]
¢þ
>WENV181958646
OGZM01000240
[OGZM] human gut metagenome; faeces
23580
23663
+
Ser
TGA
[ENA]
¢þ
>WENV181960315
OGZN01047573
[OGZN] human gut metagenome; faeces
148
65
-
Ser
TGA
[ENA]
¢þ
>WENV181965401
OGZT01000474
[OGZT] human gut metagenome; faeces
13986
13903
-
Ser
TGA
[ENA]
¢þ
>WENV181970786
OGZY01000054
[OGZY] human gut metagenome; faeces
31142
31225
+
Ser
TGA
[ENA]
¢þ
>WENV181986692
OHAM01002193
[OHAM] human gut metagenome; faeces
10581
10664
+
Ser
TGA
[ENA]
¢þ
>WENV181993982
OHAS01007673
[OHAS] human gut metagenome; faeces
238
155
-
Ser
TGA
[ENA]
¢þ
>WENV182064823
OHEZ01017463
[OHEZ] human gut metagenome; feces
143
60
-
Ser
TGA
[ENA]
¢þ
>WENV182124100
OHJQ01002369
[OHJQ] human gut metagenome; feces
1175
1258
+
Ser
TGA
[ENA]
¢þ
>WENV182227665
OHRG01002829
[OHRG] human gut metagenome; feces
2417
2334
-
Ser
TGA
[ENA]
¢þ
>WENV182228572
OHRH01005210
[OHRH] human gut metagenome; feces
2507
2590
+
Ser
TGA
[ENA]
¢þ
>WENV182866464
OKRR01000290
[OKRR] human gut metagenome; faeces
55757
55674
-
Ser
TGA
[ENA]
¢þ
>WENV182908039
OKTF01005210
[OKTF] human gut metagenome; feces
1063
980
-
Ser
TGA
[ENA]
¢þ
>WENV183290147
OLSH01000003
[OLSH] human gut metagenome; faeces
41852
41935
+
Ser
TGA
[ENA]
¢þ
>WENV183502170
OMGS01060036
[OMGS] human gut metagenome; human gut
50
133
+
Ser
TGA
[ENA]
¢þ
>WENV183760742
PPYE01236430
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3678
3761
+
Ser
TGA
[ENA]
¢þ
>WENV183764038
PPYE01312274
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
7786
7869
+
Ser
TGA
[ENA]
¢þ
>WENV183780424
PPYF01171701
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34930
34847
-
Ser
TGA
[ENA]
¢þ
>C181003934
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
3638342
3638259
-
Ser
TGA
-
¡û
>C181160992
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1338472
1338555
+
Ser
TGA
-
¡û
>C181161049
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1658702
1658785
+
Ser
TGA
-
¡û
>C181216745
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
107683
107766
+
Ser
TGA
-
¡û
>C191210237
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2791953
2791870
-
Ser
TGA
-
¡û
>W09118767
ACDH01000021
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
42194
42277
+
Ser
TGA
[ENA]
¡û
>C191219276
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3616048
3616131
+
Ser
TGA
-
¡û
>W09125181
ACIE01000044
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
35027
35110
+
Ser
TGA
[ENA]
¡û
>W1810791355
QRIG01000013
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
41467
41550
+
Ser
TGA
[ENA]
¡û
>W1810818376
QSDE01000002
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
41981
42064
+
Ser
TGA
[ENA]
¡û
>W1810832220
QSOW01000013
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
36510
36593
+
Ser
TGA
[ENA]
¡û
>W121021749
AGWJ01000043
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
34636
34553
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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