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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.14158 (43 seq.)
>W1710873088
LMMN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
97755
97847
+
Ser
GCT
[ENA]
¡û
>W1710873232
LMMQ01000019
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
107528
107620
+
Ser
GCT
[ENA]
¡û
>W1710874368
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
228202
228294
+
Ser
GCT
[ENA]
¡û
>W1710874425
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
360911
361003
+
Ser
GCT
[ENA]
¡û
>W1710874473
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
175785
175877
+
Ser
GCT
[ENA]
¡û
>W1710874587
LMNS01000037
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
40181
40089
-
Ser
GCT
[ENA]
¡û
>W1710878300
LMQV01000023
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
110055
109963
-
Ser
GCT
[ENA]
¡û
>W1711073791
LSIX01001030
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
13607
13515
-
Ser
GCT
[ENA]
¡û
>W1711078681
LSNC01000044
Alphaproteobacteria
Methylorubrum populi [LSNC]
559
467
-
Ser
GCT
[ENA]
¡û
>W1711571755
MNAO01000129
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2223
2131
-
Ser
GCT
[ENA]
¡û
>W131051708
AMXU01000002
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
68541
68449
-
Ser
GCT
[ENA]
¡û
>C171092175
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1190709
1190617
-
Ser
GCT
-
¡û
>C171115185
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1914763
1914855
+
Ser
GCT
-
¡û
>W08002397
ABEX01000004
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
67366
67277
-
Ser
GCT
[ENA]
¡û
>C08006478
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
394598
394690
+
Ser
GCT
[Ensembl]
¡û
>C08006627
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
458659
458751
+
Ser
GCT
[Ensembl]
¡û
>WENV170586589
FUFK010429691
[FUFK] metagenome; unknown
514
606
+
Ser
GCT
[ENA]
¢þ
>C181000339
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
441203
441295
+
Ser
GCT
-
¡û
>C181175627
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
339458
339550
+
Ser
GCT
-
¡û
>C181227857
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
5683524
5683432
-
Ser
GCT
-
¡û
>W09106854
ABEC01000005
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
303890
303982
+
Ser
GCT
[ENA]
¡û
>W09107159
ABFR01000001
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
93390
93482
+
Ser
GCT
[ENA]
¡û
>C09107409
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
384032
384124
+
Ser
GCT
[Ensembl]
¡û
>C09107493
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
232397
232489
+
Ser
GCT
[Ensembl]
¡û
>C09107596
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
261958
262050
+
Ser
GCT
[Ensembl]
¡û
>W1810658550
QJJJ01000013
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
116761
116853
+
Ser
GCT
[ENA]
¡û
>SRA1015384
SRR023846.38383
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
105
13
-
Ser
GCT
[SRA]
>C161004955
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
250078
250170
+
Ser
GCT
[Ensembl]
¡û
>W1610042977
BAZM01000934
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
533
625
+
Ser
GCT
[ENA]
¡û
>W1610043180
BAZP01000475
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1568
1476
-
Ser
GCT
[ENA]
¡û
>W121010679
AGJK01000074
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
834
742
-
Ser
GCT
[ENA]
¡û
>W1610735434
LMMN01000009
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
97755
97847
+
Ser
GCT
[ENA]
¡û
>W1610735578
LMMQ01000019
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
107528
107620
+
Ser
GCT
[ENA]
¡û
>W1610736714
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
228202
228294
+
Ser
GCT
[ENA]
¡û
>W1610736771
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
360911
361003
+
Ser
GCT
[ENA]
¡û
>W1610736819
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
175785
175877
+
Ser
GCT
[ENA]
¡û
>W1610736933
LMNS01000037
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
40181
40089
-
Ser
GCT
[ENA]
¡û
>W1610740646
LMQV01000023
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
110055
109963
-
Ser
GCT
[ENA]
¡û
>W1610913096
LSIX01001030
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
13607
13515
-
Ser
GCT
[ENA]
¡û
>W1610917591
LSNC01000044
Alphaproteobacteria
Methylorubrum populi [LSNC]
559
467
-
Ser
GCT
[ENA]
¡û
>W1710040137
BAZM01000934
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
533
625
+
Ser
GCT
[ENA]
¡û
>W1710040340
BAZP01000475
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1568
1476
-
Ser
GCT
[ENA]
¡û
>W1710567569
FOSV01000038
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
1040
948
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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