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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141747 (28 seq.)
>W1711096451
LTHT01000114
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
13915
13998
+
Ser
TGA
[ENA]
¡û
>WENV181580126
OGJZ01007096
[OGJZ] metagenome; Human gut stool
4340
4257
-
Ser
TGA
[ENA]
¢þ
>WENV181794829
OGRS01003190
[OGRS] human gut metagenome; faeces
2799
2716
-
Ser
TGA
[ENA]
¢þ
>WENV181859362
OGWQ01001023
[OGWQ] human gut metagenome; faeces
15567
15484
-
Ser
TGA
[ENA]
¢þ
>WENV181892576
OGXP01002895
[OGXP] human gut metagenome; faeces
6227
6144
-
Ser
TGA
[ENA]
¢þ
>WENV181948306
OGZE01001319
[OGZE] human gut metagenome; faeces
1046
963
-
Ser
TGA
[ENA]
¢þ
>WENV181958928
OGZM01000847
[OGZM] human gut metagenome; faeces
16998
17081
+
Ser
TGA
[ENA]
¢þ
>WENV181965821
OGZT01004507
[OGZT] human gut metagenome; faeces
4900
4817
-
Ser
TGA
[ENA]
¢þ
>WENV182002784
OHBA01012984
[OHBA] human gut metagenome; feces
926
843
-
Ser
TGA
[ENA]
¢þ
>WENV182008117
OHBI01018630
[OHBI] human gut metagenome; feces
131
214
+
Ser
TGA
[ENA]
¢þ
>WENV182138500
OHKN01010859
[OHKN] human gut metagenome; feces
767
850
+
Ser
TGA
[ENA]
¢þ
>WENV183308852
OLUK01001190
[OLUK] human gut metagenome; faeces
328
411
+
Ser
TGA
[ENA]
¢þ
>WENV183501941
OMGS01018426
[OMGS] human gut metagenome; human gut
849
932
+
Ser
TGA
[ENA]
¢þ
>WENV183760880
PPYE01241218
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1018
935
-
Ser
TGA
[ENA]
¢þ
>WENV183764012
PPYE01311727
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
178
95
-
Ser
TGA
[ENA]
¢þ
>WENV183780574
PPYF01172210
[PPYF] human gut metagenome; stool from patient with Crohn's disease
13796
13879
+
Ser
TGA
[ENA]
¢þ
>C181003906
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
304342
304425
+
Ser
TGA
-
¡û
>C181161031
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
802257
802174
-
Ser
TGA
-
¡û
>C181161089
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1100367
1100284
-
Ser
TGA
-
¡û
>C181216785
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3088425
3088342
-
Ser
TGA
-
¡û
>C191210202
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
25600
25683
+
Ser
TGA
-
¡û
>W09118797
ACDH01000056
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
13838
13921
+
Ser
TGA
[ENA]
¡û
>C191219294
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
2930139
2930056
-
Ser
TGA
-
¡û
>W09125168
ACIE01000012
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
13880
13963
+
Ser
TGA
[ENA]
¡û
>W1810818418
QSDE01000047
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
1158
1075
-
Ser
TGA
[ENA]
¡û
>W121021760
AGWJ01000050
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
1461
1378
-
Ser
TGA
[ENA]
¡û
>W1710600963
FUWX01000007
Fusobacteriota
Cetobacterium ceti [FUWX]
163223
163306
+
Ser
TGA
[ENA]
¡û
>W1710600978
FUWX01000012
Fusobacteriota
Cetobacterium ceti [FUWX]
7839
7756
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK