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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.143090 (78 seq.)
>A171000939
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2585074
2584998
-
Glu
TTC
-
¡û
>A171004619
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1253920
1253997
+
Glu
TTC
-
¡û
>A171004620
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1254716
1254793
+
Glu
TTC
-
¡û
>A171005059
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2897998
2897921
-
Glu
TTC
-
¡û
>A171005060
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2897368
2897291
-
Glu
TTC
-
¡û
>A171005488
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
2667540
2667463
-
Glu
TTC
-
¡û
>A171005489
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
2667185
2667108
-
Glu
TTC
-
¡û
>WENV180206217
OBAI01000103
[OBAI] human gut metagenome; human gut
20338
20414
+
Glu
TTC
[ENA]
¢þ
>WENV180223279
OBBG01000359
[OBBG] human gut metagenome; human gut
287
363
+
Glu
TTC
[ENA]
¢þ
>WENV180237169
OBCX01014583
[OBCX] human gut metagenome; human gut
288
364
+
Glu
TTC
[ENA]
¢þ
>WENV181186691
OEMZ01014594
[OEMZ] gut metagenome; human stools
283
207
-
Glu
TTC
[ENA]
¢þ
>WENV181618869
OGMC01023429
[OGMC] metagenome; Human gut stool
378
302
-
Glu
TTC
[ENA]
¢þ
>WENV181674994
OGOP01001033
[OGOP] human gut metagenome; faeces
7957
8033
+
Glu
TTC
[ENA]
¢þ
>WENV181864447
OGWU01000517
[OGWU] human gut metagenome; faeces
2736
2812
+
Glu
TTC
[ENA]
¢þ
>WENV181942345
OGYZ01000054
[OGYZ] human gut metagenome; faeces
47517
47593
+
Glu
TTC
[ENA]
¢þ
>WENV182098986
OHHQ01046792
[OHHQ] human gut metagenome; feces
51
127
+
Glu
TTC
[ENA]
¢þ
>WENV182215496
OHQM01000200
[OHQM] human gut metagenome; feces
21906
21830
-
Glu
TTC
[ENA]
¢þ
>WENV182220070
OHQR01036210
[OHQR] human gut metagenome; feces
654
578
-
Glu
TTC
[ENA]
¢þ
>WENV182296965
OHWG01050643
[OHWG] human gut metagenome; feces
201
125
-
Glu
TTC
[ENA]
¢þ
>WENV182363009
OICE01017300
[OICE] human gut metagenome; feces
415
491
+
Glu
TTC
[ENA]
¢þ
>WENV182364643
OICH01013505
[OICH] human gut metagenome; feces
817
893
+
Glu
TTC
[ENA]
¢þ
>WENV182371681
OICU01029873
[OICU] human gut metagenome; feces
382
458
+
Glu
TTC
[ENA]
¢þ
>WENV182668287
OJNJ01000021
[OJNJ] human gut metagenome; feces
58075
57999
-
Glu
TTC
[ENA]
¢þ
>WENV182681925
OJNV01032536
[OJNV] human gut metagenome; human gut
260
336
+
Glu
TTC
[ENA]
¢þ
>WENV182945682
OKVK01000666
[OKVK] human gut metagenome; human gut
8685
8609
-
Glu
TTC
[ENA]
¢þ
>WENV183036624
OLGA01002129
[OLGA] human gut metagenome; faeces
8349
8425
+
Glu
TTC
[ENA]
¢þ
>WENV183042778
OLGD01008866
[OLGD] human gut metagenome; faeces
4190
4114
-
Glu
TTC
[ENA]
¢þ
>WENV183116140
OLNQ01055800
[OLNQ] human gut metagenome; faeces
742
818
+
Glu
TTC
[ENA]
¢þ
>WENV183137882
OLOH01000130
[OLOH] human gut metagenome; faeces
13751
13675
-
Glu
TTC
[ENA]
¢þ
>WENV183156557
OLOS01013166
[OLOS] human gut metagenome; faeces
1752
1828
+
Glu
TTC
[ENA]
¢þ
>WENV183175097
OLPF01000025
[OLPF] human gut metagenome; faeces
68222
68298
+
Glu
TTC
[ENA]
¢þ
>WENV183198610
OLPV01002952
[OLPV] human gut metagenome; faeces
8913
8837
-
Glu
TTC
[ENA]
¢þ
>WENV183277163
OLSA01000116
[OLSA] human gut metagenome; faeces
51709
51633
-
Glu
TTC
[ENA]
¢þ
>WENV183311789
OLVO01017821
[OLVO] human gut metagenome; faeces
1117
1041
-
Glu
TTC
[ENA]
¢þ
>WENV183369434
OLXS01028574
[OLXS] human gut metagenome; feces
148
224
+
Glu
TTC
[ENA]
¢þ
>WENV183471018
OMEK01020296
[OMEK] human gut metagenome; feces
320
396
+
Glu
TTC
[ENA]
¢þ
>WENV183473267
OMER01002091
[OMER] human gut metagenome; feces
248
324
+
Glu
TTC
[ENA]
¢þ
>WENV183565722
OOBZ01021881
[OOBZ] human gut metagenome; human gut
1651
1727
+
Glu
TTC
[ENA]
¢þ
>WENV183654776
OQWD01000645
[OQWD] human gut metagenome; human gut
8077
8153
+
Glu
TTC
[ENA]
¢þ
>WENV170105050
CEAZ01059831
[CEAZ] gut metagenome; human stools
291
215
-
Glu
TTC
[ENA]
¢þ
>At1522
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2842453
2842530
+
Glu
TTC
[Ensembl]
¡û
>At1523
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2843083
2843160
+
Glu
TTC
[Ensembl]
¡û
>WENV170670910
LAHU01004275
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
65
139
+
Glu
TTC
[ENA]
¢þ
>WENV170675506
LCWZ01099939
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
219
145
-
Glu
TTC
[ENA]
¢þ
>WENV170675829
LDZQ01000830
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1322
1248
-
Glu
TTC
[ENA]
¢þ
>WENV170675907
LDZQ01001231
[LDZQ] terrestrial metagenome; oil reservoir sample I2
6375
6296
-
Glu
TTC
[ENA]
¢þ
>W1910230564
FOUJ01000001
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
1002893
1002816
-
Glu
TTC
[ENA]
¡û
>W1910230565
FOUJ01000001
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
1002617
1002540
-
Glu
TTC
[ENA]
¡û
>W1910569819
JJPC01000106
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
9907
9984
+
Glu
TTC
[ENA]
¡û
>W1910569820
JJPC01000106
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
10562
10639
+
Glu
TTC
[ENA]
¡û
>W1910569860
JJPD01000121
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
4559
4482
-
Glu
TTC
[ENA]
¡û
>W1910569861
JJPD01000121
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
3904
3827
-
Glu
TTC
[ENA]
¡û
>W1910570517
JJPQ01000060
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
9878
9955
+
Glu
TTC
[ENA]
¡û
>W1910570518
JJPQ01000060
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
10533
10610
+
Glu
TTC
[ENA]
¡û
>W1910570627
JJPS01000142
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
4576
4499
-
Glu
TTC
[ENA]
¡û
>W1910570628
JJPS01000142
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
3921
3844
-
Glu
TTC
[ENA]
¡û
>W1910570798
JJPW01000001
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
23829
23752
-
Glu
TTC
[ENA]
¡û
>W1910570799
JJPW01000001
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
23174
23097
-
Glu
TTC
[ENA]
¡û
>W1910571433
JJQI01000066
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
10199
10276
+
Glu
TTC
[ENA]
¡û
>W1910571434
JJQI01000066
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
10854
10931
+
Glu
TTC
[ENA]
¡û
>W1910571950
JJQS01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
7639
7562
-
Glu
TTC
[ENA]
¡û
>W1910571951
JJQS01000003
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
6984
6907
-
Glu
TTC
[ENA]
¡û
>W1910572023
JJQT01000101
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
27293
27370
+
Glu
TTC
[ENA]
¡û
>W1910572024
JJQT01000101
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
27948
28025
+
Glu
TTC
[ENA]
¡û
>W1910572308
JJQZ01000058
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
24014
23937
-
Glu
TTC
[ENA]
¡û
>W1910572309
JJQZ01000058
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
23359
23282
-
Glu
TTC
[ENA]
¡û
>W1910655467
LZPM01000042
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
19660
19734
+
Glu
TTC
[ENA]
¡û
>W1910656101
MAIE01000052
Euryarchaeota
Methanobrevibacter sp. A54 [MAIE]
4926
4850
-
Glu
TTC
[ENA]
¡û
>W1910832167
MZGU01000004
Euryarchaeota
Methanobrevibacter woesei DSM 11979 [MZGU]
95577
95653
+
Glu
TTC
[ENA]
¡û
>W1910832170
MZGU01000004
Euryarchaeota
Methanobrevibacter woesei DSM 11979 [MZGU]
95926
96002
+
Glu
TTC
[ENA]
¡û
>W1911690445
QLOE01000002
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
163109
163032
-
Glu
TTC
[ENA]
¡û
>W1610002446
AELO01000036
Euryarchaeota
Methanobrevibacter smithii TS146C [AELO]
13673
13597
-
Glu
TTC
[ENA]
¡û
>W1610002685
AELV01000022
Euryarchaeota
Methanobrevibacter smithii TS94B [AELV]
95302
95226
-
Glu
TTC
[ENA]
¡û
>W1610049181
BBET01000007
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
8211
8135
-
Glu
TTC
[ENA]
¡û
>W1610083213
CBVX010000001
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
496554
496478
-
Glu
TTC
[ENA]
¡û
>W1610083292
CBWS010000003
Euryarchaeota
Methanobrevibacter oralis JMR01 [CBWS]
32704
32628
-
Glu
TTC
[ENA]
¡û
>W1610670255
LKAZ01000046
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
82255
82332
+
Glu
TTC
[ENA]
¡û
>W1610670256
LKAZ01000046
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
82759
82836
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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