This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.143406 (109 seq.)
>W1710917406
LNVY01000015
Alphaproteobacteria
Tritonibacter mobilis [LNVY]
136572
136655
+
Leu
TAG
[ENA]
¡û
>W1711050810
LRRR01000026
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
3937
3854
-
Leu
TAG
[ENA]
¡û
>W1711126424
LUOO01000088
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
14995
14912
-
Leu
TAG
[ENA]
¡û
>W1711135075
LUYN01000031
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
1560
1477
-
Leu
TAG
[ENA]
¡û
>W1711175233
LWEQ01000008
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
5396
5313
-
Leu
TAG
[ENA]
¡û
>W1711175847
LWFA01001482
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
84
1
-
Leu
TAG
[ENA]
¡û
>W1711175861
LWFA01002348
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
3587
3504
-
Leu
TAG
[ENA]
¡û
>W1711176090
LWFD01000302
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
11471
11388
-
Leu
TAG
[ENA]
¡û
>W1711177827
LWGH01000233
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
1675
1758
+
Leu
TAG
[ENA]
¡û
>W1711258959
LYUZ01000079
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
16930
16847
-
Leu
TAG
[ENA]
¡û
>W1711357114
MDHA01000009
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
54184
54267
+
Leu
TAG
[ENA]
¡û
>W1711621457
MPDC01000033
Alphaproteobacteria
Alphaproteobacteria bacterium MedPE-SWcel [MPDC]
32749
32832
+
Leu
TAG
[ENA]
¡û
>W1711642889
MPZR01000005
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
109454
109371
-
Leu
TAG
[ENA]
¡û
>W1711642911
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
411194
411277
+
Leu
TAG
[ENA]
¡û
>W1711642975
MPZT01000003
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
123414
123331
-
Leu
TAG
[ENA]
¡û
>W1711643071
MPZV01000003
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
518552
518635
+
Leu
TAG
[ENA]
¡û
>W1711643102
MPZW01000002
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
455546
455629
+
Leu
TAG
[ENA]
¡û
>W1711643167
MPZX01000003
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
115852
115769
-
Leu
TAG
[ENA]
¡û
>W1711709294
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
958625
958542
-
Leu
TAG
[ENA]
¡û
>W1711711769
MTBG01000001
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
288012
287929
-
Leu
TAG
[ENA]
¡û
>W1711947193
NBNX01000001
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
218800
218717
-
Leu
TAG
[ENA]
¡û
>W1711947244
NBNY01000001
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
232104
232021
-
Leu
TAG
[ENA]
¡û
>W1711947306
NBNZ01000006
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
167155
167072
-
Leu
TAG
[ENA]
¡û
>W1711947367
NBOB01000001
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
548696
548779
+
Leu
TAG
[ENA]
¡û
>W131050058
AMWC01000442
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
1504
1421
-
Leu
TAG
[ENA]
¡û
>W131242020
BASI01000003
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
595997
596080
+
Leu
TAG
[ENA]
¡û
>C171033710
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
1552146
1552063
-
Leu
TAG
-
¡û
>C171072503
CP018076
Alphaproteobacteria
Sulfitobacter alexandrii AM1-D1 [CP018076]
2321866
2321783
-
Leu
TAG
-
¡û
>C171094348
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
2560345
2560428
+
Leu
TAG
-
¡û
>C171105932
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
1694551
1694468
-
Leu
TAG
-
¡û
>W131214675
ATUJ01000013
Alphaproteobacteria
Paracoccus zeaxanthinifaciens ATCC 21588 [ATUJ]
51974
52057
+
Leu
TAG
[ENA]
¡û
>C023213
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
2429513
2429430
-
Leu
TAG
[Ensembl]
¡û
>w018812
AATQ01000011
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
12863
12783
-
Leu
TAG
[ENA]
¡û
>w012551
AAMO01000017
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
42381
42296
-
Leu
TAG
[ENA]
¡û
>W141020470
AJKJ01000058
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
31992
32075
+
Leu
TAG
[ENA]
¡û
>WENV180394644
OBPS01030374
[OBPS] marine metagenome; ENVO:00002010 seawater
135
52
-
Leu
TAG
[ENA]
¢þ
>W141082506
AUNB01000029
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
6352
6269
-
Leu
TAG
[ENA]
¡û
>W141082580
AUND01000001
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
654163
654080
-
Leu
TAG
[ENA]
¡û
>W141142891
AWRV01000037
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
577
494
-
Leu
TAG
[ENA]
¡û
>W141151611
AXBE01000004
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
575146
575063
-
Leu
TAG
[ENA]
¡û
>W141151679
AXBG01000005
Alphaproteobacteria
Sedimentitalea nanhaiensis DSM 24252 [AXBG]
14109
14192
+
Leu
TAG
[ENA]
¡û
>WENV182549016
OJBX01006851
[OJBX] seawater metagenome; Sea water
690
773
+
Leu
TAG
[ENA]
¢þ
>WENV182568949
OJEX01007327
[OJEX] seawater metagenome; Sea water
729
646
-
Leu
TAG
[ENA]
¢þ
>WENV182571241
OJFG01002794
[OJFG] seawater metagenome; Sea water
418
501
+
Leu
TAG
[ENA]
¢þ
>WENV182591897
OJIO01012903
[OJIO] seawater metagenome; Sea water
94
177
+
Leu
TAG
[ENA]
¢þ
>W141278717
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
3149668
3149751
+
Leu
TAG
[ENA]
¡û
>WENV170319047
CESQ01110196
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
118
-
Leu
TAG
[ENA]
¢þ
>WENV170455701
CEVA01132252
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
216
133
-
Leu
TAG
[ENA]
¢þ
>WENV170476766
CEVI01205527
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
253
170
-
Leu
TAG
[ENA]
¢þ
>WENV170705255
LLEQ01001454
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
242
325
+
Leu
TAG
[ENA]
¢þ
>WENV170705257
LLEQ01001488
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1913
1830
-
Leu
TAG
[ENA]
¢þ
>WENV170727342
LULE01000002
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
882379
882296
-
Leu
TAG
[ENA]
¢þ
>WENV170739326
LULQ01000271
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
14995
14912
-
Leu
TAG
[ENA]
¢þ
>WENV170762168
LUMW01001643
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
3808
3891
+
Leu
TAG
[ENA]
¢þ
>WENV170806133
MDSW01077263
[MDSW] marine metagenome; seawater
3817
3734
-
Leu
TAG
[ENA]
¢þ
>C181052317
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
697728
697811
+
Leu
TAG
-
¡û
>C181060601
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
1359195
1359112
-
Leu
TAG
-
¡û
>C181064479
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
1103125
1103208
+
Leu
TAG
-
¡û
>C181123423
CP025815
Alphaproteobacteria
Sulfitobacter sp. JL08 [CP025815]
1737901
1737984
+
Leu
TAG
-
¡û
>W141564870
JIBC01000001
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
1744
1661
-
Leu
TAG
[ENA]
¡û
>W1910285366
FRFA01000018
Alphaproteobacteria
Tateyamaria sp. Alg231-49 [FRFA]
83507
83590
+
Leu
TAG
[ENA]
¡û
>W1910442787
FWFN01000002
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
435244
435327
+
Leu
TAG
[ENA]
¡û
>W1910443035
FWFS01000006
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
169403
169486
+
Leu
TAG
[ENA]
¡û
>W1911283647
NTJD01000009
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
111743
111826
+
Leu
TAG
[ENA]
¡û
>W1911492682
OBEA01000006
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
236182
236265
+
Leu
TAG
[ENA]
¡û
>W1911495102
OBMP01000002
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
342670
342753
+
Leu
TAG
[ENA]
¡û
>W1911575810
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
2302988
2303071
+
Leu
TAG
[ENA]
¡û
>W1911813298
QZEX01000006
Alphaproteobacteria
Chachezhania antarctica SM1703 [QZEX]
123900
123983
+
Leu
TAG
[ENA]
¡û
>W1810101707
PGTC01000017
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
435172
435255
+
Leu
TAG
[ENA]
¡û
>W1810101770
PGTD01000018
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
236956
237039
+
Leu
TAG
[ENA]
¡û
>W1810364801
PVTN01000009
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
8914
8831
-
Leu
TAG
[ENA]
¡û
>W1810426262
PYWA01000005
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
56129
56212
+
Leu
TAG
[ENA]
¡û
>W1810464055
QAAA01000036
Alphaproteobacteria
Rhodovulum imhoffii DSM 18064 [QAAA]
478
395
-
Leu
TAG
[ENA]
¡û
>W1810476802
QAOH01000004
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
172014
171931
-
Leu
TAG
[ENA]
¡û
>W1810486241
QAXT01000001
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
285560
285643
+
Leu
TAG
[ENA]
¡û
>W1810494702
QBFD01000007
Alphaproteobacteria
Sulfitobacter sp. DFL-14 [QBFD]
101816
101899
+
Leu
TAG
[ENA]
¡û
>W1810494748
QBFE01000011
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
223523
223440
-
Leu
TAG
[ENA]
¡û
>W1810503533
QBKF01000001
Alphaproteobacteria
Pararhodobacter aggregans DSM 18938 [QBKF]
634854
634937
+
Leu
TAG
[ENA]
¡û
>W1810504517
QBKZ01000005
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
101255
101172
-
Leu
TAG
[ENA]
¡û
>W1810532477
QCYH01000006
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
131418
131501
+
Leu
TAG
[ENA]
¡û
>W1810535416
QDDR01000001
Alphaproteobacteria
Pararhodobacter aggregans D1-19 [QDDR]
747408
747491
+
Leu
TAG
[ENA]
¡û
>W1810543582
QDKM01000001
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
524541
524458
-
Leu
TAG
[ENA]
¡û
>W1810583979
QEYD01000005
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
126013
126096
+
Leu
TAG
[ENA]
¡û
>W1810694739
QLMG01000019
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
781
698
-
Leu
TAG
[ENA]
¡û
>W1810721649
QNSD01000027
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
46402
46485
+
Leu
TAG
[ENA]
¡û
>W1511482800
JWLH01000001
Alphaproteobacteria
Leisingera sp. ANG-S5 [JWLH]
557462
557545
+
Leu
TAG
[ENA]
¡û
>W1511482869
JWLI01000006
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
237617
237700
+
Leu
TAG
[ENA]
¡û
>W11170465
AFPM01000211
Alphaproteobacteria
Oceanicola sp. S124 [AFPM]
13620
13703
+
Leu
TAG
[ENA]
¡û
>C161087729
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3050672
3050755
+
Leu
TAG
-
¡û
>W1610018455
AQQX01000006
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
176053
176136
+
Leu
TAG
[ENA]
¡û
>W1610775304
LNVY01000015
Alphaproteobacteria
Tritonibacter mobilis [LNVY]
136572
136655
+
Leu
TAG
[ENA]
¡û
>W1610891939
LRRR01000026
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
3937
3854
-
Leu
TAG
[ENA]
¡û
>W1610937357
LUOO01000088
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
14995
14912
-
Leu
TAG
[ENA]
¡û
>W1610946195
LUYN01000031
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
1560
1477
-
Leu
TAG
[ENA]
¡û
>W1610983546
LWEQ01000008
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
5396
5313
-
Leu
TAG
[ENA]
¡û
>W1610984160
LWFA01001482
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
84
1
-
Leu
TAG
[ENA]
¡û
>W1610984174
LWFA01002348
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
3587
3504
-
Leu
TAG
[ENA]
¡û
>W1610984403
LWFD01000302
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
11471
11388
-
Leu
TAG
[ENA]
¡û
>W1610986140
LWGH01000233
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
1675
1758
+
Leu
TAG
[ENA]
¡û
>W1611021224
LYUZ01000079
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
16930
16847
-
Leu
TAG
[ENA]
¡û
>WENV078330
AAFZ01027412
Fossil microbial community from Whale Fall (Santa Cruz Basin)
575
490
-
Leu
TAG
[ENA]
>W1710015396
AQQQ01000003
Alphaproteobacteria
Roseovarius sp. 22II1-1F6A [AQQQ]
17111
17028
-
Leu
TAG
[ENA]
¡û
>W1710015671
AQQX01000006
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
176053
176136
+
Leu
TAG
[ENA]
¡û
>W1710542594
FNZG01000004
Alphaproteobacteria
Pseudooceanicola nitratireducens [FNZG]
10905
10988
+
Leu
TAG
[ENA]
¡û
>W1710558235
FOLR01000004
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
70490
70573
+
Leu
TAG
[ENA]
¡û
>W1710570323
FOVB01000005
Alphaproteobacteria
Thioclava dalianensis [FOVB]
91722
91639
-
Leu
TAG
[ENA]
¡û
>W1710571073
FOVP01000019
Alphaproteobacteria
Roseovarius lutimaris [FOVP]
42947
43030
+
Leu
TAG
[ENA]
¡û
>W1710584535
FQVP01000005
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
303353
303436
+
Leu
TAG
[ENA]
¡û
>W1710598804
FTOG01000001
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
400030
399947
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK