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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.143756 (68 seq.)
>W1710786911
LJJD01000036
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
4696
4779
+
Leu
CAA
[ENA]
¡û
>W1710804088
LJYY01000067
Bacillota
Lysinibacillus sphaericus [LJYY]
66809
66725
-
Leu
CAA
[ENA]
¡û
>W1710811150
LKIE01000112
Bacillota
Lysinibacillus sp. F5 [LKIE]
1644
1728
+
Leu
CAA
[ENA]
¡û
>W131044874
AMQZ01000024
Bacillota
Lysinibacillus fusiformis ZB2 [AMQZ]
588
672
+
Leu
CAA
[ENA]
¡û
>W131156586
AQPX01000005
Bacillota
Lysinibacillus sphaericus OT4b.31 [AQPX]
310
394
+
Leu
CAA
[ENA]
¡û
>W1711179076
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
3214487
3214403
-
Leu
CAA
[ENA]
¡û
>W1711352876
MDDN01000012
Bacillota
Lysinibacillus xylanilyticus [MDDN]
119382
119299
-
Leu
CAA
[ENA]
¡û
>W131237656
AUOZ01000013
Bacillota
Lysinibacillus sphaericus KCTC 3346 [AUOZ]
73876
73792
-
Leu
CAA
[ENA]
¡û
>W141186598
AYKQ01000059
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
759
843
+
Leu
CAA
[ENA]
¡û
>W141233752
BAWC01000032
Bacillota
Bacillus sp. JCM 19047 [BAWC]
41063
40980
-
Leu
CAA
[ENA]
¡û
>W141233788
BAWC01000086
Bacillota
Bacillus sp. JCM 19047 [BAWC]
3560
3643
+
Leu
CAA
[ENA]
¡û
>WENV170669495
LAHS01000341
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
48884
48800
-
Leu
CAA
[ENA]
¢þ
>WENV170966098
MTEX01001363
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
257
173
-
Leu
CAA
[ENA]
¢þ
>C181041968
CP019980
Bacillota
Lysinibacillus sphaericus DSM 28 [CP019980]
769451
769534
+
Leu
CAA
-
¡û
>C181125152
CP026007
Bacillota
Lysinibacillus sp. YS11 [CP026007]
3869813
3869730
-
Leu
CAA
-
¡û
>C181147714
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
4694330
4694247
-
Leu
CAA
-
¡û
>C191040645
CP026120
Bacillota
Lysinibacillus sphaericus KCCM 35418 [CP026120]
2865288
2865205
-
Leu
CAA
-
¡û
>C191089411
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
1973321
1973237
-
Leu
CAA
-
¡û
>W141561307
JHYI01000021
Bacillota
Alkalihalobacterium bogoriense ATCC BAA-922 [JHYI]
1695
1778
+
Leu
CAA
[ENA]
¡û
>W141704212
JMMU01000041
Bacillota
Lysinibacillus sphaericus [JMMU]
191
275
+
Leu
CAA
[ENA]
¡û
>W141800970
JPDK01000123
Bacillota
Lysinibacillus sphaericus [JPDK]
1228
1312
+
Leu
CAA
[ENA]
¡û
>W141800998
JPDL01000070
Bacillota
Lysinibacillus sphaericus [JPDL]
176
260
+
Leu
CAA
[ENA]
¡û
>W141822587
JRBA01000012
Bacillota
Lysinibacillus fusiformis [JRBA]
71425
71341
-
Leu
CAA
[ENA]
¡û
>W1910183420
BJNS01000064
Bacillota
Lysinibacillus sphaericus NBRC 15095 [BJNS]
16608
16525
-
Leu
CAA
[ENA]
¡û
>W1910184287
BJOM01000019
Bacillota
Lysinibacillus fusiformis NBRC 15717 [BJOM]
85012
84929
-
Leu
CAA
[ENA]
¡û
>W1910505811
FYEQ01000008
Bacillota
Bacillus sp. BO [FYEQ]
5000
5083
+
Leu
CAA
[ENA]
¡û
>W1911285057
NTMQ01000004
Bacillota
Lysinibacillus fusiformis GM [NTMQ]
1780
1863
+
Leu
CAA
[ENA]
¡û
>W1911670405
QFRU01000014
Bacillota
Bacillus sp. CGMCC 1.16541 [QFRU]
99663
99581
-
Leu
CAA
[ENA]
¡û
>W1911760394
QWUA01000006
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
1661
1744
+
Leu
CAA
[ENA]
¡û
>W1810054477
PDFK01000007
Bacillota
Lysinibacillus fusiformis Juneja [PDFK]
136263
136346
+
Leu
CAA
[ENA]
¡û
>W1810078609
PEKE01000024
Bacillota
Lysinibacillus sphaericus KU skv2 1 [PEKE]
882
965
+
Leu
CAA
[ENA]
¡û
>W1810100682
PGLV01000002
Bacillota
Lysinibacillus sphaericus A1 [PGLV]
10469
10552
+
Leu
CAA
[ENA]
¡û
>W1810104210
PGVE01000082
Bacillota
Neobacillus cucumis V32-6 [PGVE]
16960
16880
-
Leu
CAA
[ENA]
¡û
>W1810118814
PHQY01000684
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
1988
2071
+
Leu
CAA
[ENA]
¡û
>W1810424054
PYUE01000013
Bacillota
Lysinibacillus tabacifolii K3514 [PYUE]
73968
73885
-
Leu
CAA
[ENA]
¡û
>W1810426557
PYWG01000044
Bacillota
Lysinibacillus parviboronicapiens VT1065 [PYWG]
1736
1819
+
Leu
CAA
[ENA]
¡û
>W1810426950
PYWL01000012
Bacillota
Lysinibacillus fusiformis ATCC 7055 [PYWL]
1769
1852
+
Leu
CAA
[ENA]
¡û
>W1810427047
PYWM01000083
Bacillota
Lysinibacillus mangiferihumi M-GX18 [PYWM]
1772
1855
+
Leu
CAA
[ENA]
¡û
>C151013169
CP006837
Bacillota
Lysinibacillus varians GY32 [CP006837]
3964673
3964589
-
Leu
CAA
[Ensembl]
¡û
>W10115356
ADJR01000045
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
69454
69370
-
Leu
CAA
[ENA]
¡û
>W1511316250
JPVR01000060
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [JPVR]
67776
67692
-
Leu
CAA
[ENA]
¡û
>W11118942
ADJR01000045
Bacillota
Lysinibacillus fusiformis ZC1 [ADJR]
69454
69370
-
Leu
CAA
[ENA]
¡û
>W1511392273
JSZM01000024
Bacillota
Lysinibacillus sp. A1 [JSZM]
1630
1714
+
Leu
CAA
[ENA]
¡û
>W1511689849
LFXJ01000012
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
1467
1551
+
Leu
CAA
[ENA]
¡û
>W1511689859
LFXJ01000013
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
821
905
+
Leu
CAA
[ENA]
¡û
>C161074946
CP014643
Bacillota
Lysinibacillus sphaericus OT4b.25 [CP014643]
1378922
1379006
+
Leu
CAA
-
¡û
>C161078531
CP014856
Bacillota
Lysinibacillus sphaericus [CP014856]
16933
16849
-
Leu
CAA
-
¡û
>C161084723
CP015224
Bacillota
Lysinibacillus sphaericus 2362 [CP015224]
3118628
3118544
-
Leu
CAA
-
¡û
>W121070940
AJXM01000031
Bacillota
Lysinibacillus boronitolerans F1182 [AJXM]
284
368
+
Leu
CAA
[ENA]
¡û
>W1610042449
BAXS01000009
Bacillota
Bacillus sp. JCM 19059 [BAXS]
142024
141941
-
Leu
CAA
[ENA]
¡û
>W1610042450
BAXS01000009
Bacillota
Bacillus sp. JCM 19059 [BAXS]
106005
105922
-
Leu
CAA
[ENA]
¡û
>W1610045500
BBBP01000041
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
316
399
+
Leu
CAA
[ENA]
¡û
>W1610047559
BBDJ01000043
Bacillota
Lysinibacillus pakistanensis [BBDJ]
1600
1683
+
Leu
CAA
[ENA]
¡û
>W1610650766
LJJD01000036
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
4696
4779
+
Leu
CAA
[ENA]
¡û
>W1610667945
LJYY01000067
Bacillota
Lysinibacillus sphaericus [LJYY]
66809
66725
-
Leu
CAA
[ENA]
¡û
>W1610675205
LKIE01000112
Bacillota
Lysinibacillus sp. F5 [LKIE]
1644
1728
+
Leu
CAA
[ENA]
¡û
>W1610987028
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
3214487
3214403
-
Leu
CAA
[ENA]
¡û
>W1710022824
AVCW01000022
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [AVCW]
67776
67692
-
Leu
CAA
[ENA]
¡û
>W1710039543
BAXS01000009
Bacillota
Bacillus sp. JCM 19059 [BAXS]
142024
141941
-
Leu
CAA
[ENA]
¡û
>W1710039544
BAXS01000009
Bacillota
Bacillus sp. JCM 19059 [BAXS]
106005
105922
-
Leu
CAA
[ENA]
¡û
>W1710042341
BBBP01000041
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
316
399
+
Leu
CAA
[ENA]
¡û
>W1710044164
BBDJ01000043
Bacillota
Lysinibacillus pakistanensis [BBDJ]
1600
1683
+
Leu
CAA
[ENA]
¡û
>W1710506040
FMUG01000022
Bacillota
Lysinibacillus fusiformis SG8 [FMUG]
838
922
+
Leu
CAA
[ENA]
¡û
>W1710506510
FMUO01000042
Bacillota
Lysinibacillus sp. SG9 [FMUO]
3298
3214
-
Leu
CAA
[ENA]
¡û
>W1710510247
FMXU01000036
Bacillota
Lysinibacillus sp. TC-37 [FMXU]
3310
3226
-
Leu
CAA
[ENA]
¡û
>W1710549351
FOEL01000017
Bacillota
Lysinibacillus fusiformis TC-13 [FOEL]
69479
69396
-
Leu
CAA
[ENA]
¡û
>W1710564673
FOQQ01000013
Bacillota
Lysinibacillus fusiformis SG53 [FOQQ]
198212
198128
-
Leu
CAA
[ENA]
¡û
>W1710603248
FUYW01000024
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
1537
1621
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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