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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.143758 (36 seq.)
>W141007786
AGYA01000017
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
55207
55130
-
Pro
TGG
[ENA]
¡û
>WENV180311155
OBJT01137853
[OBJT] soil metagenome; soil
220
295
+
Pro
TGG
[ENA]
¢þ
>WENV180708214
ODFJ01000570
[ODFJ] human metagenome; G_DNA_Tongue dorsum
20410
20335
-
Pro
TGG
[ENA]
¢þ
>WENV180779800
ODIN01017783
[ODIN] human metagenome; G_DNA_Throat
323
398
+
Pro
TGG
[ENA]
¢þ
>WENV180807293
ODJI01001199
[ODJI] human metagenome; G_DNA_Tongue dorsum
7011
7086
+
Pro
TGG
[ENA]
¢þ
>WENV180836325
ODKE01115250
[ODKE] human metagenome; G_DNA_Supragingival plaque
118
193
+
Pro
TGG
[ENA]
¢þ
>WENV180843805
ODKN01012876
[ODKN] human metagenome; G_DNA_Supragingival plaque
1066
991
-
Pro
TGG
[ENA]
¢þ
>WENV180877848
ODLV01003613
[ODLV] human metagenome; G_DNA_Tongue dorsum
2296
2221
-
Pro
TGG
[ENA]
¢þ
>WENV180960113
ODUM01010860
[ODUM] human metagenome; G_DNA_Tongue dorsum
198
273
+
Pro
TGG
[ENA]
¢þ
>WENV180977340
ODUZ01000375
[ODUZ] human metagenome; G_DNA_Tongue dorsum
6545
6620
+
Pro
TGG
[ENA]
¢þ
>WENV181001629
ODVW01001164
[ODVW] human metagenome; G_DNA_Buccal mucosa
1727
1652
-
Pro
TGG
[ENA]
¢þ
>WENV181017258
ODWR01042653
[ODWR] human metagenome; G_DNA_Tongue dorsum
231
156
-
Pro
TGG
[ENA]
¢þ
>WENV181041932
ODXS01074630
[ODXS] human metagenome; G_DNA_Tongue dorsum
385
310
-
Pro
TGG
[ENA]
¢þ
>WENV181043536
ODXV01000094
[ODXV] human metagenome; G_DNA_Tongue dorsum
49352
49277
-
Pro
TGG
[ENA]
¢þ
>WENV181049421
ODYD01000157
[ODYD] human metagenome; G_DNA_Supragingival plaque
8210
8135
-
Pro
TGG
[ENA]
¢þ
>WENV181051260
ODYD01299396
[ODYD] human metagenome; G_DNA_Supragingival plaque
57
132
+
Pro
TGG
[ENA]
¢þ
>WENV181076202
OEAP01002464
[OEAP] human metagenome; G_DNA_Supragingival plaque
3332
3407
+
Pro
TGG
[ENA]
¢þ
>WENV181108507
OEEJ01000036
[OEEJ] human metagenome; G_DNA_Tongue dorsum
46106
46181
+
Pro
TGG
[ENA]
¢þ
>WENV181136152
OEGI01001046
[OEGI] human metagenome; G_DNA_Supragingival plaque
4895
4970
+
Pro
TGG
[ENA]
¢þ
>WENV181150543
OEHW01003430
[OEHW] human metagenome; G_DNA_Tongue dorsum
5492
5417
-
Pro
TGG
[ENA]
¢þ
>WENV181159835
OEIK01000284
[OEIK] human metagenome; G_DNA_Supragingival plaque
7126
7051
-
Pro
TGG
[ENA]
¢þ
>WENV183729719
PJTR01000029
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
161824
161899
+
Pro
TGG
[ENA]
¢þ
>WENV183729771
PJTR01000068
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
120505
120430
-
Pro
TGG
[ENA]
¢þ
>WENV183738224
PJUD01126120
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
324
249
-
Pro
TGG
[ENA]
¢þ
>WENV183740538
PJUF01003196
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3919
3844
-
Pro
TGG
[ENA]
¢þ
>WENV170658351
JTFP01092050
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
532
609
+
Pro
TGG
[ENA]
¢þ
>C191134768
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1390816
1390891
+
Pro
TGG
-
¡û
>C191134770
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1391040
1391115
+
Pro
TGG
-
¡û
>W1910577997
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84295
84220
-
Pro
TGG
[ENA]
¡û
>W1910577998
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84188
84113
-
Pro
TGG
[ENA]
¡û
>W1910578022
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
13469
13394
-
Pro
TGG
[ENA]
¡û
>W1911788801
QYCZ01000001
Bacteroidota
Bergeyella cardium 1 [QYCZ]
1566576
1566501
-
Pro
TGG
[ENA]
¡û
>C121009090
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1483154
1483231
+
Pro
TGG
[Ensembl]
¡û
>C121009093
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1483480
1483557
+
Pro
TGG
[Ensembl]
¡û
>C121009095
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1742934
1743011
+
Pro
TGG
[Ensembl]
¡û
>C121009096
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
1743036
1743113
+
Pro
TGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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