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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.14394 (79 seq.)
>W1710870062
LMKF01000025
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
391460
391369
-
Ser
GGA
[ENA]
¡û
>W1710875806
LMOR01000003
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
296342
296433
+
Ser
GGA
[ENA]
¡û
>W1710876513
LMPH01000002
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
415619
415528
-
Ser
GGA
[ENA]
¡û
>W1710878598
LMRB01000004
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
226995
226904
-
Ser
GGA
[ENA]
¡û
>W1710909119
LNQG01000009
Actinomycetota
Microbacterium enclense [LNQG]
116319
116228
-
Ser
GGA
[ENA]
¡û
>W1711009269
LQQP01000002
Actinomycetota
Microbacterium sp. T32 [LQQP]
42835
42926
+
Ser
GGA
[ENA]
¡û
>W1711022917
LRAD01000026
Actinomycetota
Microbacterium laevaniformans [LRAD]
200397
200486
+
Ser
GGA
[ENA]
¡û
>W1711061115
LRYC01000048
Actinomycetota
Microbacterium hominis [LRYC]
43221
43310
+
Ser
GGA
[ENA]
¡û
>W1711270758
LZEM01000018
Actinomycetota
Microbacterium arborescens [LZEM]
16615
16524
-
Ser
GGA
[ENA]
¡û
>W1711385529
MEEH01000084
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
13802
13711
-
Ser
GGA
[ENA]
¡û
>W1711385584
MEEJ01000004
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
44339
44430
+
Ser
GGA
[ENA]
¡û
>W1711385645
MEEK01000037
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
99
10
-
Ser
GGA
[ENA]
¡û
>W1711385690
MEEL01000037
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
33214
33303
+
Ser
GGA
[ENA]
¡û
>W131204583
ATCC01000006
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
698747
698836
+
Ser
GGA
[ENA]
¡û
>W1711501598
MKRU01000091
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
23866
23955
+
Ser
GGA
[ENA]
¡û
>W1711503428
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
1131666
1131575
-
Ser
GGA
[ENA]
¡û
>W1711503495
MKTQ01000029
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
94118
94027
-
Ser
GGA
[ENA]
¡û
>W1711724794
MTQM01000009
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
929709
929618
-
Ser
GGA
[ENA]
¡û
>C171065811
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
2908484
2908575
+
Ser
GGA
-
¡û
>C171073393
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
1296013
1295922
-
Ser
GGA
-
¡û
>C171083220
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
985808
985899
+
Ser
GGA
-
¡û
>W141223176
BADA01000216
Actinomycetota
Microbacterium sp. B19 [BADA]
1034
943
-
Ser
GGA
[ENA]
¡û
>W141223211
BADB01000060
Actinomycetota
Microbacterium sp. B24 [BADB]
6730
6641
-
Ser
GGA
[ENA]
¡û
>W141223242
BADB01000406
Actinomycetota
Microbacterium sp. B24 [BADB]
3706
3795
+
Ser
GGA
[ENA]
¡û
>W141230026
BASQ01000001
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
986114
986023
-
Ser
GGA
[ENA]
¡û
>W141291977
JAUF01000018
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
42659
42748
+
Ser
GGA
[ENA]
¡û
>C181115675
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
1071193
1071282
+
Ser
GGA
-
¡û
>C191056021
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
1034417
1034507
+
Ser
GGA
-
¡û
>C191073223
CP031015
Actinomycetota
Microbacterium sp. ABRD28 [CP031015]
2821324
2821235
-
Ser
GGA
-
¡û
>C191119736
CP034121
Actinomycetota
Microbacterium sp. RG1 [CP034121]
1743221
1743130
-
Ser
GGA
-
¡û
>C191122380
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
2663495
2663406
-
Ser
GGA
-
¡û
>W141565012
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
113397
113488
+
Ser
GGA
[ENA]
¡û
>W141739350
JNNT01000096
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
989
898
-
Ser
GGA
[ENA]
¡û
>W141817475
JQKT01000007
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
264363
264454
+
Ser
GGA
[ENA]
¡û
>W1910181897
BJML01000002
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
389171
389080
-
Ser
GGA
[ENA]
¡û
>W1910182604
BJNA01000034
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
1162
1071
-
Ser
GGA
[ENA]
¡û
>W1910913726
NHRF01000009
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
47894
47804
-
Ser
GGA
[ENA]
¡û
>W1911140357
NOYP01000074
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
129991
129900
-
Ser
GGA
[ENA]
¡û
>W1911159673
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
1030904
1030814
-
Ser
GGA
[ENA]
¡û
>W1810234102
PPEE01000001
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
320800
320891
+
Ser
GGA
[ENA]
¡û
>W1810262635
PQSV01000001
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
996554
996464
-
Ser
GGA
[ENA]
¡û
>W1810475505
QAJB01000428
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
2508
2599
+
Ser
GGA
[ENA]
¡û
>W1810538328
QDFT01000002
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
152616
152707
+
Ser
GGA
[ENA]
¡û
>W1810698862
QMBN01000001
Actinomycetota
Microbacterium sp. SMR1 [QMBN]
88665
88756
+
Ser
GGA
[ENA]
¡û
>W1810722505
QNUV01000041
Actinomycetota
Microbacterium arborescens DSM 20754 [QNUV]
107737
107827
+
Ser
GGA
[ENA]
¡û
>W1810722553
QNUW01000012
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
47692
47601
-
Ser
GGA
[ENA]
¡û
>W1810787029
QRDK01000002
Actinomycetota
Microbacterium sp. AG157 [QRDK]
455529
455438
-
Ser
GGA
[ENA]
¡û
>W1810861339
QTTU01000003
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
207079
206988
-
Ser
GGA
[ENA]
¡û
>C11115183
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
2804620
2804711
+
Ser
GGA
[Ensembl]
¡û
>W1511489495
JWSZ01000001
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
148915
149006
+
Ser
GGA
[ENA]
¡û
>W1610074013
BCWI01000014
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
36753
36842
+
Ser
GGA
[ENA]
¡û
>W121061268
AJGR01000124
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
205611
205522
-
Ser
GGA
[ENA]
¡û
>W1610590777
LDRR01000112
Actinomycetota
Microbacterium testaceum [LDRR]
24176
24267
+
Ser
GGA
[ENA]
¡û
>W1610590818
LDRS01000121
Actinomycetota
Microbacterium testaceum [LDRS]
16670
16579
-
Ser
GGA
[ENA]
¡û
>W1610590853
LDRT01000089
Actinomycetota
Microbacterium testaceum [LDRT]
9259
9350
+
Ser
GGA
[ENA]
¡û
>W1610590896
LDRU01000066
Actinomycetota
Microbacterium testaceum [LDRU]
46402
46493
+
Ser
GGA
[ENA]
¡û
>W1610590916
LDRV01000022
Actinomycetota
Microbacterium testaceum [LDRV]
33330
33421
+
Ser
GGA
[ENA]
¡û
>W1610732408
LMKF01000025
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
391460
391369
-
Ser
GGA
[ENA]
¡û
>W1610738152
LMOR01000003
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
296342
296433
+
Ser
GGA
[ENA]
¡û
>W1610738859
LMPH01000002
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
415619
415528
-
Ser
GGA
[ENA]
¡û
>W1610740944
LMRB01000004
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
226995
226904
-
Ser
GGA
[ENA]
¡û
>W1610767478
LNQG01000009
Actinomycetota
Microbacterium enclense [LNQG]
116319
116228
-
Ser
GGA
[ENA]
¡û
>W1610857789
LQQP01000002
Actinomycetota
Microbacterium sp. T32 [LQQP]
42835
42926
+
Ser
GGA
[ENA]
¡û
>W1610871162
LRAD01000026
Actinomycetota
Microbacterium laevaniformans [LRAD]
200397
200486
+
Ser
GGA
[ENA]
¡û
>W1610902092
LRYC01000048
Actinomycetota
Microbacterium hominis [LRYC]
43221
43310
+
Ser
GGA
[ENA]
¡û
>W1611030322
LZEM01000018
Actinomycetota
Microbacterium arborescens [LZEM]
16615
16524
-
Ser
GGA
[ENA]
¡û
>W1710071131
BCWI01000014
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
36753
36842
+
Ser
GGA
[ENA]
¡û
>W1710510841
FMYG01000005
Actinomycetota
Microbacterium enclense [FMYG]
154894
154803
-
Ser
GGA
[ENA]
¡û
>W1710525105
FNJG01000003
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
326399
326490
+
Ser
GGA
[ENA]
¡û
>W1710525423
FNJN01000004
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
402196
402287
+
Ser
GGA
[ENA]
¡û
>W1710526730
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
991398
991307
-
Ser
GGA
[ENA]
¡û
>W1710565090
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
264380
264471
+
Ser
GGA
[ENA]
¡û
>W1710598014
FTNQ01000004
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
171841
171932
+
Ser
GGA
[ENA]
¡û
>W1710600079
FTPQ01000003
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
328551
328460
-
Ser
GGA
[ENA]
¡û
>W1710710057
LDRR01000112
Actinomycetota
Microbacterium testaceum [LDRR]
24176
24267
+
Ser
GGA
[ENA]
¡û
>W1710710098
LDRS01000121
Actinomycetota
Microbacterium testaceum [LDRS]
16670
16579
-
Ser
GGA
[ENA]
¡û
>W1710710133
LDRT01000089
Actinomycetota
Microbacterium testaceum [LDRT]
9259
9350
+
Ser
GGA
[ENA]
¡û
>W1710710176
LDRU01000066
Actinomycetota
Microbacterium testaceum [LDRU]
46402
46493
+
Ser
GGA
[ENA]
¡û
>W1710710196
LDRV01000022
Actinomycetota
Microbacterium testaceum [LDRV]
33330
33421
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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