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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144185 (14 seq.)
>W131036441
ALVR01000002
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
115506
115423
-
Leu
TAG
[ENA]
¡û
>W1711178853
LWHC01000052
Cyanobacteriota
Cyanobacterium sp. IPPAS B-1200 [LWHC]
45069
45149
+
Leu
TAG
[ENA]
¡û
>WENV170640263
JFJP01015420
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6942
7022
+
Leu
TAG
[ENA]
¢þ
>C181108390
CP024912
Cyanobacteriota
Cyanobacterium sp. HL-69 [CP024912]
2216033
2216113
+
Leu
TAG
-
¡û
>C191000298
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
2688430
2688510
+
Leu
TAG
-
¡û
>W1910872445
NDHW01000182
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
6728
6808
+
Leu
TAG
[ENA]
¡û
>W1911638992
PXOH01000005
Cyanobacteriota
Aphanothece hegewaldii CCALA 016 [PXOH]
248212
248294
+
Leu
TAG
[ENA]
¡û
>W1810053428
PDDM01000001
Cyanobacteriota
Pseudanabaena sp. BC1403 [PDDM]
508724
508644
-
Leu
TAG
[ENA]
¡û
>W1810069178
PEBC01000013
Cyanobacteriota
Cyanobacterium aponinum B-1201 [PEBC]
82530
82450
-
Leu
TAG
[ENA]
¡û
>C161001537
AP014821
Cyanobacteriota
Geminocystis sp. NIES-3709 [AP014821]
1801304
1801384
+
Leu
TAG
[Ensembl]
¡û
>C131010195
CP003940
Cyanobacteriota
Cyanobacterium stanieri PCC 7202 [CP003940]
1371313
1371233
-
Leu
TAG
[Ensembl]
¡û
>C131010501
CP003947
Cyanobacteriota
Cyanobacterium aponinum PCC 10605 [CP003947]
2164256
2164176
-
Leu
TAG
[Ensembl]
¡û
>W1610634155
LIRE01000669
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
2114
2194
+
Leu
TAG
[ENA]
¡û
>W1710768532
LIRE01000669
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
2114
2194
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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