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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144206 (25 seq.)
>W1711335907
MBRF01000032
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
191935
192018
+
Leu
GAG
[ENA]
¡û
>W141021326
AJLK01000163
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
46790
46872
+
Leu
GAG
[ENA]
¡û
>W141021403
AJLM01000097
Cyanobacteriota
Chlorogloeopsis fritschii PCC 9212 [AJLM]
36721
36803
+
Leu
GAG
[ENA]
¡û
>W141091956
AUZM01000049
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
31861
31941
+
Leu
GAG
[ENA]
¡û
>W141242759
CAIS01000331
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
31177
31257
+
Leu
GAG
[ENA]
¡û
>W141242868
CAIY01000031
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
15027
14947
-
Leu
GAG
[ENA]
¡û
>WENV170019205
BBPD01005963
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
12956
13036
+
Leu
GAG
[ENA]
¢þ
>C141007941
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
2155046
2154966
-
Leu
GAG
-
¡û
>W1910617503
LIRO01000009
Cyanobacteriota
Limnothrix sp. PR1529 [LIRO]
149311
149394
+
Leu
GAG
[ENA]
¡û
>W1910896845
NGAA01000045
Cyanobacteriota
Fischerella thermalis 111/344/542 [NGAA]
1312
1230
-
Leu
GAG
[ENA]
¡û
>W1910909754
NGZT01000011
Cyanobacteriota
Fischerella thermalis WC119 [NGZT]
31484
31402
-
Leu
GAG
[ENA]
¡û
>W1910909889
NGZW01000063
Cyanobacteriota
Fischerella thermalis WC341 [NGZW]
33109
33191
+
Leu
GAG
[ENA]
¡û
>W1910910282
NHAG01000041
Cyanobacteriota
Fischerella thermalis WC249 [NHAG]
27543
27625
+
Leu
GAG
[ENA]
¡û
>W1910910443
NHAK01000157
Cyanobacteriota
Fischerella thermalis WC213 [NHAK]
35644
35726
+
Leu
GAG
[ENA]
¡û
>W1910976647
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
1093415
1093495
+
Leu
GAG
[ENA]
¡û
>W1911070709
NMQB01000322
Cyanobacteriota
Fischerella thermalis CCMEE 5273 [NMQB]
3397
3315
-
Leu
GAG
[ENA]
¡û
>W1911071046
NMQJ01000296
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
2116
2198
+
Leu
GAG
[ENA]
¡û
>W1911178281
NQME01000553
Cyanobacteriota
Fischerella thermalis CCMEE 5194 [NQME]
7483
7565
+
Leu
GAG
[ENA]
¡û
>W1911638334
PVWL01000071
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
10033
9953
-
Leu
GAG
[ENA]
¡û
>C151081781
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
3587308
3587390
+
Leu
GAG
[Ensembl]
¡û
>W1511108005
JJML01000019
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
76591
76509
-
Leu
GAG
[ENA]
¡û
>C121000595
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
986399
986479
+
Leu
GAG
[Ensembl]
¡û
>C161002616
AP017305
Cyanobacteriota
Fischerella sp. NIES-3754 [AP017305]
2277141
2277223
+
Leu
GAG
[Ensembl]
¡û
>C161046044
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
986553
986633
+
Leu
GAG
-
¡û
>W1611066614
MBRF01000032
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
191935
192018
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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