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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144567 (43 seq.)
>w027344
ABBX01000127
Unclassified
candidate division TM7 single-cell isolate TM7c TM7 isolate TM7c [ABBX]
22400
22322
-
His
GTG
[ENA]
¡û
>w027287
ABBV01000972
Unclassified
candidate division TM7 single-cell isolate TM7a TM7 isolate TM7a [ABBV]
424
346
-
His
GTG
[ENA]
¡û
>WENV180726474
ODGU01000036
[ODGU] human metagenome; G_DNA_Supragingival plaque
48833
48757
-
His
GTG
[ENA]
¢þ
>WENV180734417
ODGZ01008208
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1355
1431
+
His
GTG
[ENA]
¢þ
>WENV180739407
ODHD01072962
[ODHD] human metagenome; G_DNA_Supragingival plaque
52
128
+
His
GTG
[ENA]
¢þ
>WENV180749829
ODHS01000036
[ODHS] human metagenome; G_DNA_Supragingival plaque
53925
54001
+
His
GTG
[ENA]
¢þ
>WENV180764827
ODIB01001721
[ODIB] human metagenome; G_DNA_Supragingival plaque
1465
1389
-
His
GTG
[ENA]
¢þ
>WENV180778611
ODIM01022145
[ODIM] human metagenome; G_DNA_Supragingival plaque
155
79
-
His
GTG
[ENA]
¢þ
>WENV180786948
ODIS01000584
[ODIS] human metagenome; G_DNA_Supragingival plaque
12773
12697
-
His
GTG
[ENA]
¢þ
>WENV180795172
ODIZ01045151
[ODIZ] human metagenome; G_DNA_Tongue dorsum
304
380
+
His
GTG
[ENA]
¢þ
>WENV180795623
ODJB01000080
[ODJB] human metagenome; G_DNA_Supragingival plaque
44302
44226
-
His
GTG
[ENA]
¢þ
>WENV180800454
ODJD01000026
[ODJD] human metagenome; G_DNA_Supragingival plaque
49732
49808
+
His
GTG
[ENA]
¢þ
>WENV180803794
ODJG01000063
[ODJG] human metagenome; G_DNA_Supragingival plaque
18488
18564
+
His
GTG
[ENA]
¢þ
>WENV180808408
ODJK01000021
[ODJK] human metagenome; G_DNA_Subgingival plaque
32144
32220
+
His
GTG
[ENA]
¢þ
>WENV180813028
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
170301
170377
+
His
GTG
[ENA]
¢þ
>WENV180823934
ODJX01000013
[ODJX] human metagenome; G_DNA_Supragingival plaque
56211
56287
+
His
GTG
[ENA]
¢þ
>WENV180846874
ODKT01027052
[ODKT] human metagenome; G_DNA_Supragingival plaque
1612
1688
+
His
GTG
[ENA]
¢þ
>WENV180859329
ODLD01000343
[ODLD] human metagenome; G_DNA_Supragingival plaque
21327
21251
-
His
GTG
[ENA]
¢þ
>WENV180888072
ODMN01000037
[ODMN] human metagenome; G_DNA_Supragingival plaque
48002
47926
-
His
GTG
[ENA]
¢þ
>WENV180921512
ODTJ01000091
[ODTJ] human metagenome; G_DNA_Supragingival plaque
58302
58226
-
His
GTG
[ENA]
¢þ
>WENV180923811
ODTK01000202
[ODTK] human metagenome; G_DNA_Supragingival plaque
33779
33703
-
His
GTG
[ENA]
¢þ
>WENV180937672
ODTX01000024
[ODTX] human metagenome; G_DNA_Supragingival plaque
60462
60538
+
His
GTG
[ENA]
¢þ
>WENV180943251
ODUC01000065
[ODUC] human metagenome; G_DNA_Supragingival plaque
13329
13405
+
His
GTG
[ENA]
¢þ
>WENV180980841
ODVE01002556
[ODVE] human metagenome; G_DNA_Supragingival plaque
4951
4875
-
His
GTG
[ENA]
¢þ
>WENV180982522
ODVF01000055
[ODVF] human metagenome; G_DNA_Supragingival plaque
32023
32099
+
His
GTG
[ENA]
¢þ
>WENV180987810
ODVK01145553
[ODVK] human metagenome; G_DNA_Supragingival plaque
140
216
+
His
GTG
[ENA]
¢þ
>WENV180998028
ODVT01000003
[ODVT] human metagenome; G_DNA_Buccal mucosa
320551
320627
+
His
GTG
[ENA]
¢þ
>WENV181002031
ODVX01000003
[ODVX] human metagenome; G_DNA_Supragingival plaque
323073
323149
+
His
GTG
[ENA]
¢þ
>WENV181007225
ODWE01000002
[ODWE] human metagenome; G_DNA_Supragingival plaque
48833
48757
-
His
GTG
[ENA]
¢þ
>WENV181062990
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
81041
81117
+
His
GTG
[ENA]
¢þ
>WENV181066462
ODZI01000052
[ODZI] human metagenome; G_DNA_Supragingival plaque
55413
55489
+
His
GTG
[ENA]
¢þ
>WENV181075927
OEAP01000777
[OEAP] human metagenome; G_DNA_Supragingival plaque
12795
12719
-
His
GTG
[ENA]
¢þ
>WENV181078435
OEAS01000066
[OEAS] human metagenome; G_DNA_Supragingival plaque
48827
48751
-
His
GTG
[ENA]
¢þ
>WENV181091895
OEBC01119057
[OEBC] human metagenome; G_DNA_Supragingival plaque
104
28
-
His
GTG
[ENA]
¢þ
>WENV181106581
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
97582
97506
-
His
GTG
[ENA]
¢þ
>WENV181121070
OEFL01000341
[OEFL] human metagenome; G_DNA_Supragingival plaque
12262
12338
+
His
GTG
[ENA]
¢þ
>WENV181138001
OEGJ01069909
[OEGJ] human metagenome; G_DNA_Supragingival plaque
167
91
-
His
GTG
[ENA]
¢þ
>WENV181145811
OEHQ01000089
[OEHQ] human metagenome; G_DNA_Supragingival plaque
56446
56370
-
His
GTG
[ENA]
¢þ
>WENV181152094
OEIA01000086
[OEIA] human metagenome; G_DNA_Supragingival plaque
30730
30654
-
His
GTG
[ENA]
¢þ
>WENV181375857
OFQZ01005012
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
2339
2415
+
His
GTG
[ENA]
¢þ
>WENV181389671
OFRO01001655
[OFRO] wastewater metagenome; Exp Tend NO 10WW
942
866
-
His
GTG
[ENA]
¢þ
>WENV080297
ABBV01000972
Oral TM7a microbial communities of Human
424
346
-
His
GTG
[ENA]
>WENV080353
ABBX01000127
Oral TM7c microbial communities of Human
22400
22322
-
His
GTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK