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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144772 (39 seq.)
>C010555
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
202580
202656
+
Met
CAT
[Ensembl]
¡û
>WENV170001004
AGBJ01000343
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
3240
3164
-
Met
CAT
[ENA]
¢þ
>C181213874
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
1322796
1322872
+
Met
CAT
-
¡û
>C191003930
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
628301
628225
-
Met
CAT
-
¡û
>C191213718
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
282463
282539
+
Met
CAT
-
¡û
>W1910545640
FZLU01000015
Campylobacterota
Helicobacter ailurogastricus [FZLU]
16419
16343
-
Met
CAT
[ENA]
¡û
>W1910545974
FZME01000002
Campylobacterota
Helicobacter heilmannii [FZME]
98771
98695
-
Met
CAT
[ENA]
¡û
>W1910546048
FZMG01000017
Campylobacterota
Helicobacter heilmannii [FZMG]
11283
11359
+
Met
CAT
[ENA]
¡û
>W1910546089
FZMH01000009
Campylobacterota
Helicobacter ailurogastricus [FZMH]
76811
76887
+
Met
CAT
[ENA]
¡û
>W1910546145
FZMI01000042
Campylobacterota
Helicobacter cinaedi [FZMI]
2352
2428
+
Met
CAT
[ENA]
¡û
>W1910546831
FZNE01000003
Campylobacterota
Helicobacter cholecystus [FZNE]
124613
124537
-
Met
CAT
[ENA]
¡û
>W1910550297
FZQU01000003
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
144470
144546
+
Met
CAT
[ENA]
¡û
>W1910550497
FZQY01000008
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
144471
144547
+
Met
CAT
[ENA]
¡û
>W1910756135
MLAO01000004
Campylobacterota
Helicobacter sp. 11S03491-1 [MLAO]
95339
95263
-
Met
CAT
[ENA]
¡û
>W1910756174
MLAP01000006
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
123431
123507
+
Met
CAT
[ENA]
¡û
>W1910756289
MLAS01000015
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
463
387
-
Met
CAT
[ENA]
¡û
>W1810002690
BEYZ01000008
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
1639
1563
-
Met
CAT
[ENA]
¡û
>W1810002866
BEZE01000302
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
5783
5859
+
Met
CAT
[ENA]
¡û
>W1810002965
BEZH01000098
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
1639
1563
-
Met
CAT
[ENA]
¡û
>W1810003158
BEZN01000005
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
2064
2140
+
Met
CAT
[ENA]
¡û
>W1810010704
BGKD01000198
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
1635
1559
-
Met
CAT
[ENA]
¡û
>W1810010731
BGKE01000140
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
3954
3878
-
Met
CAT
[ENA]
¡û
>W1810010842
BGKH01000052
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
5791
5867
+
Met
CAT
[ENA]
¡û
>W1810046698
NXLU01000002
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
186354
186430
+
Met
CAT
[ENA]
¡û
>W1810046734
NXLV01000007
Campylobacterota
Helicobacter brantae MIT 04-9366 [NXLV]
18942
18866
-
Met
CAT
[ENA]
¡û
>W1510073735
CDMG01000009
Campylobacterota
Helicobacter ailurogastricus [CDMG]
341503
341427
-
Met
CAT
[ENA]
¡û
>W1510073744
CDMH01000006
Campylobacterota
Helicobacter ailurogastricus [CDMH]
76726
76802
+
Met
CAT
[ENA]
¡û
>W1510073775
CDMI01000022
Campylobacterota
Helicobacter heilmannii [CDMI]
63086
63162
+
Met
CAT
[ENA]
¡û
>W1510073814
CDMJ01000047
Campylobacterota
Helicobacter heilmannii [CDMJ]
43951
44027
+
Met
CAT
[ENA]
¡û
>W1510073866
CDMK01000002
Campylobacterota
Helicobacter heilmannii [CDMK]
334940
334864
-
Met
CAT
[ENA]
¡û
>W1510073900
CDML01000038
Campylobacterota
Helicobacter ailurogastricus [CDML]
30732
30656
-
Met
CAT
[ENA]
¡û
>W1510073929
CDMM01000038
Campylobacterota
Helicobacter heilmannii [CDMM]
62763
62839
+
Met
CAT
[ENA]
¡û
>W1510073945
CDMN01000005
Campylobacterota
Helicobacter ailurogastricus [CDMN]
30931
30855
-
Met
CAT
[ENA]
¡û
>W1510074047
CDMP01000041
Campylobacterota
Helicobacter heilmannii [CDMP]
133671
133595
-
Met
CAT
[ENA]
¡û
>C10107592
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
1324285
1324361
+
Met
CAT
[Ensembl]
¡û
>C121001372
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
619108
619032
-
Met
CAT
[Ensembl]
¡û
>C121017515
FR871757
Campylobacterota
Helicobacter bizzozeronii CIII-1 [FR871757]
755459
755535
+
Met
CAT
[Ensembl]
¡û
>C161097583
CP016503
Campylobacterota
Helicobacter enhydrae MIT 01-6242 [CP016503]
1249607
1249683
+
Met
CAT
[Ensembl]
¡û
>C161105019
HE984298
Campylobacterota
Helicobacter heilmannii ASB1.4 type strain:ASB1.4 [HE984298]
1177398
1177474
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK