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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144887 (15 seq.)
>W1711136340
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
41292
41216
-
Arg
TCG
[ENA]
¡û
>C171057205
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
2792959
2793035
+
Arg
TCG
-
¡û
>C171118610
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
2658711
2658787
+
Arg
TCG
-
¡û
>WENV170692859
LGOV01038050
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
206
281
+
Arg
TCG
[ENA]
¢þ
>C181078334
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
2589178
2589254
+
Arg
TCG
-
¡û
>W09110100
ABUV01000002
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
419488
419412
-
Arg
TCG
[ENA]
¡û
>W141814441
JQGK01000005
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
2243
2167
-
Arg
TCG
[ENA]
¡û
>C151018381
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
2891156
2891232
+
Arg
TCG
[Ensembl]
¡û
>W1510014738
BBQE01000016
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
47179
47103
-
Arg
TCG
[ENA]
¡û
>W1510014776
BBQF01000003
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
141855
141779
-
Arg
TCG
[ENA]
¡û
>W1511365463
JSEC01000003
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
357102
357178
+
Arg
TCG
[ENA]
¡û
>C121011170
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
2271267
2271343
+
Arg
TCG
[Ensembl]
¡û
>C161001364
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
2421755
2421831
+
Arg
TCG
-
¡û
>C161001430
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
188329
188253
-
Arg
TCG
-
¡û
>W1610947460
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
41292
41216
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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