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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144903 (127 seq.)
>W1710997842
LQCI01000034
Actinomycetota
Amycolatopsis regifaucium [LQCI]
609429
609505
+
Asp
GTC
[ENA]
¡û
>W1711183518
LWLC01000001
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
573832
573756
-
Asp
GTC
[ENA]
¡û
>W1711190870
LWSF01000040
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
42440
42364
-
Asp
GTC
[ENA]
¡û
>W1711343468
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
3923319
3923393
+
Asp
GTC
[ENA]
¡û
>W1711343520
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
3926384
3926458
+
Asp
GTC
[ENA]
¡û
>W1711343596
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1545383
1545309
-
Asp
GTC
[ENA]
¡û
>W1711343620
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2693309
2693383
+
Asp
GTC
[ENA]
¡û
>W1711343690
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
5563867
5563941
+
Asp
GTC
[ENA]
¡û
>W1711343767
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3381888
3381814
-
Asp
GTC
[ENA]
¡û
>W1711343784
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2072741
2072815
+
Asp
GTC
[ENA]
¡û
>W1711343875
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3385226
3385152
-
Asp
GTC
[ENA]
¡û
>W1711343890
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
501368
501442
+
Asp
GTC
[ENA]
¡û
>W1711343938
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
191214
191288
+
Asp
GTC
[ENA]
¡û
>W1711386167
MEEZ01000194
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
15494
15420
-
Asp
GTC
[ENA]
¡û
>W1711386193
MEFA01000070
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
101
175
+
Asp
GTC
[ENA]
¡û
>W1711387144
MEGH01000057
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
37478
37552
+
Asp
GTC
[ENA]
¡û
>W1711427802
MIFY01000024
Actinomycetota
Pseudonocardia autotrophica [MIFY]
94376
94302
-
Asp
GTC
[ENA]
¡û
>W1711427983
MIGB01000053
Actinomycetota
Pseudonocardia autotrophica [MIGB]
8355
8281
-
Asp
GTC
[ENA]
¡û
>W1711491745
MKJV01000074
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
37374
37448
+
Asp
GTC
[ENA]
¡û
>W1711491824
MKJX01000051
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
601
527
-
Asp
GTC
[ENA]
¡û
>W1711499947
MKQR01000026
Actinomycetota
Actinokineospora bangkokensis [MKQR]
587038
586962
-
Asp
GTC
[ENA]
¡û
>W1711505770
MKVV01000024
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
135064
135138
+
Asp
GTC
[ENA]
¡û
>W131186137
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
3971324
3971400
+
Asp
GTC
[ENA]
¡û
>W1711662687
MQUP01000013
Actinomycetota
Amycolatopsis keratiniphila subsp. nogabecina [MQUP]
514641
514565
-
Asp
GTC
[ENA]
¡û
>W1711694663
MSIE01000037
Actinomycetota
Actinophytocola xanthii 11-183 [MSIE]
11100
11174
+
Asp
GTC
[ENA]
¡û
>W1711694728
MSIF01000044
Actinomycetota
Actinophytocola xinjiangensis [MSIF]
36188
36114
-
Asp
GTC
[ENA]
¡û
>W1711724902
MTQO01000053
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
644183
644259
+
Asp
GTC
[ENA]
¡û
>W1711724961
MTQP01000068
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
842352
842428
+
Asp
GTC
[ENA]
¡û
>W1711749181
MUMH01000064
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
99282
99358
+
Asp
GTC
[ENA]
¡û
>W1711749269
MUMJ01000233
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
21884
21808
-
Asp
GTC
[ENA]
¡û
>W1711766528
MUYM01000056
Actinomycetota
Lentzea kentuckyensis [MUYM]
62998
62924
-
Asp
GTC
[ENA]
¡û
>C171050991
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
3301827
3301901
+
Asp
GTC
-
¡û
>W131165113
ARBI01000002
Actinomycetota
Actinomycetospora chiangmaiensis DSM 45062 [ARBI]
469896
469970
+
Asp
GTC
[ENA]
¡û
>W131222183
AUBB01000016
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
161454
161528
+
Asp
GTC
[ENA]
¡û
>W131231269
AUII01000015
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
92914
92840
-
Asp
GTC
[ENA]
¡û
>W141000349
ACQP01000285
Actinomycetota
Kutzneria sp. 744 [ACQP]
34053
34129
+
Asp
GTC
[ENA]
¡û
>WENV180691853
OCZS010240003
[OCZS] soil metagenome; soil
174
99
-
Asp
GTC
[ENA]
¢þ
>WENV180711991
ODFR01014753
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
252
176
-
Asp
GTC
[ENA]
¢þ
>WENV181155289
OEID01069042
[OEID] soil metagenome; soil
135
61
-
Asp
GTC
[ENA]
¢þ
>WENV181292190
OFHD01052730
[OFHD] soil metagenome; Clay
181
107
-
Asp
GTC
[ENA]
¢þ
>WENV182641669
OJLJ01000296
[OJLJ] metagenome; surface
1613
1688
+
Asp
GTC
[ENA]
¢þ
>W141278054
JAFB01000005
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
11420
11344
-
Asp
GTC
[ENA]
¡û
>WENV170648788
JRHI01002265
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
7014
7090
+
Asp
GTC
[ENA]
¢þ
>C181081526
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
7798244
7798170
-
Asp
GTC
-
¡û
>C191005721
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
688260
688334
+
Asp
GTC
-
¡û
>C191064798
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
8019940
8019866
-
Asp
GTC
-
¡û
>W141563887
JIAI01000005
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
460290
460364
+
Asp
GTC
[ENA]
¡û
>W09108154
ABTA01000040
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
32395
32471
+
Asp
GTC
[ENA]
¡û
>W09109754
ABUM01000018
Actinomycetota
Saccharomonospora viridis DSM 43017 [ABUM]
37490
37566
+
Asp
GTC
[ENA]
¡û
>W141756290
JNXC01000001
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
597506
597582
+
Asp
GTC
[ENA]
¡û
>W141757603
JNYA01000153
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
2903
2979
+
Asp
GTC
[ENA]
¡û
>W141757791
JNYD01000029
Actinomycetota
Pseudonocardia autotrophica [JNYD]
32431
32357
-
Asp
GTC
[ENA]
¡û
>W141757952
JNYH01000004
Actinomycetota
Kutzneria albida [JNYH]
27739
27663
-
Asp
GTC
[ENA]
¡û
>W141758271
JNYM01001205
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
2776
2702
-
Asp
GTC
[ENA]
¡û
>W141758713
JNYU01000579
Actinomycetota
Umezawaea tangerina [JNYU]
7763
7839
+
Asp
GTC
[ENA]
¡û
>W141758942
JNYY01000028
Actinomycetota
Amycolatopsis vancoresmycina [JNYY]
34306
34382
+
Asp
GTC
[ENA]
¡û
>W141760439
JOAA01000019
Actinomycetota
Rhodococcus rhodnii [JOAA]
229776
229700
-
Asp
GTC
[ENA]
¡û
>W141766506
JOEA01000011
Actinomycetota
Lentzea albidocapillata [JOEA]
191571
191645
+
Asp
GTC
[ENA]
¡û
>W141768652
JOFI01000053
Actinomycetota
Lentzea aerocolonigenes [JOFI]
62772
62698
-
Asp
GTC
[ENA]
¡û
>W141771441
JOHE01000034
Actinomycetota
Lentzea aerocolonigenes [JOHE]
1471
1545
+
Asp
GTC
[ENA]
¡û
>W1910038444
BEGX01000128
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
272849
272775
-
Asp
GTC
[ENA]
¡û
>W1910182894
BJNG01000030
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
39041
39115
+
Asp
GTC
[ENA]
¡û
>W1910182962
BJNH01000118
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
8713
8787
+
Asp
GTC
[ENA]
¡û
>C09100638
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
7929869
7929793
-
Asp
GTC
[Ensembl]
¡û
>W1910657704
MASW01000001
Actinomycetota
Prauserella muralis DSM 45305 [MASW]
572457
572381
-
Asp
GTC
[ENA]
¡û
>W1910812662
MVFD01000002
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
784598
784672
+
Asp
GTC
[ENA]
¡û
>W1910994828
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
1378366
1378292
-
Asp
GTC
[ENA]
¡û
>W1911678671
QHJI01000001
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
847886
847960
+
Asp
GTC
[ENA]
¡û
>W1911679497
QHKI01000017
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
121692
121768
+
Asp
GTC
[ENA]
¡û
>W1810121464
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
3856304
3856378
+
Asp
GTC
[ENA]
¡û
>W1810176383
PJPW02000019
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
2127
2201
+
Asp
GTC
[ENA]
¡û
>W1810237632
PPHF01000136
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
235104
235178
+
Asp
GTC
[ENA]
¡û
>W1810295982
PTIX01000019
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
58489
58563
+
Asp
GTC
[ENA]
¡û
>W1810364413
PVTF01000003
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
71467
71541
+
Asp
GTC
[ENA]
¡û
>W1810393092
PYAX01000006
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
513991
513917
-
Asp
GTC
[ENA]
¡û
>W1810573624
QEKW01000005
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
80512
80586
+
Asp
GTC
[ENA]
¡û
>W1810579753
QEQT01000100
Actinomycetota
Prauserella sp. PE36 [QEQT]
255472
255548
+
Asp
GTC
[ENA]
¡û
>W1810592225
QFWW01000035
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
157099
157025
-
Asp
GTC
[ENA]
¡û
>W1810597149
QGHB01000001
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
262408
262334
-
Asp
GTC
[ENA]
¡û
>W1810696991
QLTT01000002
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
557229
557303
+
Asp
GTC
[ENA]
¡û
>W1810763027
QQAU01000005
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
322257
322331
+
Asp
GTC
[ENA]
¡û
>C151017634
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
9431023
9430947
-
Asp
GTC
[Ensembl]
¡û
>C151075007
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
5103266
5103192
-
Asp
GTC
-
¡û
>C151087147
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4077820
4077894
+
Asp
GTC
-
¡û
>C151087203
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4839407
4839333
-
Asp
GTC
-
¡û
>C151105072
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
5499710
5499634
-
Asp
GTC
-
¡û
>W10100221
ABFV01000026
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
55450
55526
+
Asp
GTC
[ENA]
¡û
>W1510013170
BBOJ01000037
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
64299
64225
-
Asp
GTC
[ENA]
¡û
>W1510073598
CDME01000001
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
698
622
-
Asp
GTC
[ENA]
¡û
>W10118426
ADUJ01000853
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2408
2334
-
Asp
GTC
[ENA]
¡û
>W10128099
AEGE01000215
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
6839
6913
+
Asp
GTC
[ENA]
¡û
>WENV11100186
ADWX01329114
Ant fungus garden metagenome, Atta colombica fungus garden
78
152
+
Asp
GTC
[ENA]
¡û
>W11100221
ABFV01000026
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
55450
55526
+
Asp
GTC
[ENA]
¡û
>C11117067
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
619031
619105
+
Asp
GTC
[Ensembl]
¡û
>W11123501
ADUJ01000853
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2408
2334
-
Asp
GTC
[ENA]
¡û
>W11136811
AEGE01000215
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
6839
6913
+
Asp
GTC
[ENA]
¡û
>W1511529123
JYJG01000006
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
4315
4389
+
Asp
GTC
[ENA]
¡û
>W1511697492
LGDY01000177
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
7925
7851
-
Asp
GTC
[ENA]
¡û
>W1511697761
LGED01000262
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
29585
29661
+
Asp
GTC
[ENA]
¡û
>C161040366
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
594346
594272
-
Asp
GTC
-
¡û
>C161040414
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2299323
2299249
-
Asp
GTC
[Ensembl]
¡û
>C161045526
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
11367906
11367830
-
Asp
GTC
[Ensembl]
¡û
>C161061315
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
1703874
1703800
-
Asp
GTC
[Ensembl]
¡û
>W121024685
AHBX01000042
Actinomycetota
Saccharomonospora azurea SZMC 14600 [AHBX]
2267
2343
+
Asp
GTC
[ENA]
¡û
>W1610050379
BBFU01000534
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
483
557
+
Asp
GTC
[ENA]
¡û
>W1610051181
BBGP01000598
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
998
1072
+
Asp
GTC
[ENA]
¡û
>C131019814
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
8967711
8967635
-
Asp
GTC
[Ensembl]
¡û
>W1610852571
LQCI01000034
Actinomycetota
Amycolatopsis regifaucium [LQCI]
609429
609505
+
Asp
GTC
[ENA]
¡û
>W1610992473
LWSF01000040
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
42440
42364
-
Asp
GTC
[ENA]
¡û
>W1710046778
BBFU01000534
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
483
557
+
Asp
GTC
[ENA]
¡û
>W1710047580
BBGP01000598
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
998
1072
+
Asp
GTC
[ENA]
¡û
>W1710514725
FNBE01000009
Actinomycetota
Pseudonocardia oroxyli [FNBE]
40858
40932
+
Asp
GTC
[ENA]
¡û
>W1710515768
FNCC01000002
Actinomycetota
Lentzea fradiae [FNCC]
321501
321575
+
Asp
GTC
[ENA]
¡û
>W1710518158
FNDV01000006
Actinomycetota
Actinokineospora alba album [FNDV]
329852
329926
+
Asp
GTC
[ENA]
¡û
>W1710519481
FNET01000012
Actinomycetota
Lentzea albidocapillata violacea [FNET]
69594
69520
-
Asp
GTC
[ENA]
¡û
>W1710524641
FNIX01000001
Actinomycetota
Lentzea jiangxiensis [FNIX]
31597
31671
+
Asp
GTC
[ENA]
¡û
>W1710524864
FNJB01000006
Actinomycetota
Actinokineospora alba album [FNJB]
129256
129182
-
Asp
GTC
[ENA]
¡û
>W1710550898
FOFR01000001
Actinomycetota
Lentzea xinjiangensis [FOFR]
555378
555452
+
Asp
GTC
[ENA]
¡û
>W1710551016
FOFT01000005
Actinomycetota
Lentzea flaviverrucosa [FOFT]
213259
213185
-
Asp
GTC
[ENA]
¡û
>W1710551137
FOFV01000008
Actinomycetota
Lentzea albida [FOFV]
321308
321382
+
Asp
GTC
[ENA]
¡û
>W1710558819
FOME01000007
Actinomycetota
Saccharopolyspora kobensis jiangxiensis [FOME]
156810
156734
-
Asp
GTC
[ENA]
¡û
>W1710570169
FOUY01000044
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
43161
43235
+
Asp
GTC
[ENA]
¡û
>W1710574767
FOYL01000019
Actinomycetota
Lentzea waywayandensis [FOYL]
25237
25311
+
Asp
GTC
[ENA]
¡û
>W1710580393
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
613518
613442
-
Asp
GTC
[ENA]
¡û
>W1710589975
FRAP01000020
Actinomycetota
Pseudonocardia thermophila [FRAP]
97864
97790
-
Asp
GTC
[ENA]
¡û
>W1710606462
FWXV01000002
Actinomycetota
Kibdelosporangium aridum [FWXV]
970052
969978
-
Asp
GTC
[ENA]
¡û
>W1710606830
FWYC01000009
Actinomycetota
Lentzea albidocapillata [FWYC]
60110
60036
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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