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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144904 (83 seq.)
>W1710861716
LMDV01000008
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
200606
200532
-
Phe
GAA
[ENA]
¡û
>W1710867736
LMIN01000008
Actinomycetota
Nocardioides sp. Root224 [LMIN]
200374
200300
-
Phe
GAA
[ENA]
¡û
>W1711183519
LWLC01000001
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
573723
573647
-
Phe
GAA
[ENA]
¡û
>W131217685
ATXA01000019
Actinomycetota
Frankia sp. Iso899 [ATXA]
60919
60845
-
Phe
GAA
[ENA]
¡û
>W1711491746
MKJV01000074
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
37477
37553
+
Phe
GAA
[ENA]
¡û
>W1711491825
MKJX01000051
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
496
420
-
Phe
GAA
[ENA]
¡û
>W1711499948
MKQR01000026
Actinomycetota
Actinokineospora bangkokensis [MKQR]
586796
586722
-
Phe
GAA
[ENA]
¡û
>W1711505771
MKVV01000024
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
135168
135242
+
Phe
GAA
[ENA]
¡û
>W1711694729
MSIF01000044
Actinomycetota
Actinophytocola xinjiangensis [MSIF]
36100
36026
-
Phe
GAA
[ENA]
¡û
>W1711724962
MTQP01000068
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
842461
842537
+
Phe
GAA
[ENA]
¡û
>W1711749110
MUMG01000089
Actinomycetota
Crossiella equi [MUMG]
444
368
-
Phe
GAA
[ENA]
¡û
>W1711749182
MUMH01000064
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
99382
99458
+
Phe
GAA
[ENA]
¡û
>W1711766529
MUYM01000056
Actinomycetota
Lentzea kentuckyensis [MUYM]
62911
62834
-
Phe
GAA
[ENA]
¡û
>C171050992
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
3301914
3301991
+
Phe
GAA
-
¡û
>W131163669
AQZX01000030
Actinomycetota
Sporichthya polymorpha DSM 43042 [AQZX]
1645519
1645443
-
Phe
GAA
[ENA]
¡û
>W131170909
ARFV01000045
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
2756
2682
-
Phe
GAA
[ENA]
¡û
>W131222184
AUBB01000016
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
161566
161642
+
Phe
GAA
[ENA]
¡û
>WENV180016600
FSVL01000047
[FSVL] metagenome; soil
116
190
+
Phe
GAA
[ENA]
¢þ
>WENV180016679
FSVS01000954
[FSVS] metagenome; soil
2411
2337
-
Phe
GAA
[ENA]
¢þ
>W141000350
ACQP01000285
Actinomycetota
Kutzneria sp. 744 [ACQP]
34158
34232
+
Phe
GAA
[ENA]
¡û
>WENV180028518
FTJE01000675
[FTJE] metagenome; soil
1425
1351
-
Phe
GAA
[ENA]
¢þ
>WENV180028855
FTJH01154029
[FTJH] metagenome; soil
1384
1310
-
Phe
GAA
[ENA]
¢þ
>WENV180030407
FTJM01004218
[FTJM] metagenome; soil
3211
3135
-
Phe
GAA
[ENA]
¢þ
>W141091610
AUZE01000001
Actinomycetota
actinobacterium LLX17 [AUZE]
75823
75747
-
Phe
GAA
[ENA]
¡û
>W141170097
AXWW01000101
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
6781
6855
+
Phe
GAA
[ENA]
¡û
>W141199756
AYXG01000076
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
69121
69195
+
Phe
GAA
[ENA]
¡û
>C181081527
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
7798136
7798060
-
Phe
GAA
-
¡û
>C191064799
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
8019832
8019756
-
Phe
GAA
-
¡û
>W141563888
JIAI01000005
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
460402
460478
+
Phe
GAA
[ENA]
¡û
>W09108155
ABTA01000040
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
32503
32579
+
Phe
GAA
[ENA]
¡û
>W141756291
JNXC01000001
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
597615
597691
+
Phe
GAA
[ENA]
¡û
>W141757604
JNYA01000153
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
3011
3087
+
Phe
GAA
[ENA]
¡û
>W141757953
JNYH01000004
Actinomycetota
Kutzneria albida [JNYH]
27632
27556
-
Phe
GAA
[ENA]
¡û
>W141758365
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
445630
445706
+
Phe
GAA
[ENA]
¡û
>W141758714
JNYU01000579
Actinomycetota
Umezawaea tangerina [JNYU]
7869
7944
+
Phe
GAA
[ENA]
¡û
>W141766507
JOEA01000011
Actinomycetota
Lentzea albidocapillata [JOEA]
191673
191748
+
Phe
GAA
[ENA]
¡û
>W141766780
JOEF01000002
Actinomycetota
Allokutzneria albata [JOEF]
131231
131305
+
Phe
GAA
[ENA]
¡û
>W141766938
JOEH01000017
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
104845
104771
-
Phe
GAA
[ENA]
¡û
>W141768653
JOFI01000053
Actinomycetota
Lentzea aerocolonigenes [JOFI]
62685
62608
-
Phe
GAA
[ENA]
¡û
>W141771442
JOHE01000034
Actinomycetota
Lentzea aerocolonigenes [JOHE]
1559
1636
+
Phe
GAA
[ENA]
¡û
>W141819750
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
4617962
4618036
+
Phe
GAA
[ENA]
¡û
>W1910182895
BJNG01000030
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
39148
39222
+
Phe
GAA
[ENA]
¡û
>C09100639
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
7929761
7929685
-
Phe
GAA
[Ensembl]
¡û
>W1910994829
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
1378258
1378182
-
Phe
GAA
[ENA]
¡û
>W1911814577
QZFT01000033
Actinomycetota
Pseudonocardiaceae bacterium YIM PH 21723 [QZFT]
508
583
+
Phe
GAA
[ENA]
¡û
>W1810295983
PTIX01000019
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
58789
58863
+
Phe
GAA
[ENA]
¡û
>W1810364414
PVTF01000003
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
71573
71648
+
Phe
GAA
[ENA]
¡û
>W1810368682
PVZV01000001
Actinomycetota
Actinocorallia populi A251 [PVZV]
159151
159227
+
Phe
GAA
[ENA]
¡û
>W1810393093
PYAX01000006
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
513882
513806
-
Phe
GAA
[ENA]
¡û
>W1810592226
QFWW01000035
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
157012
156935
-
Phe
GAA
[ENA]
¡û
>W1810597150
QGHB01000001
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
262317
262240
-
Phe
GAA
[ENA]
¡û
>W1810623447
QHCP01000003
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
53920
53994
+
Phe
GAA
[ENA]
¡û
>W1810696992
QLTT01000002
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
557318
557395
+
Phe
GAA
[ENA]
¡û
>W1810763028
QQAU01000005
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
322359
322434
+
Phe
GAA
[ENA]
¡û
>W1810885751
QUNO01000001
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
319677
319751
+
Phe
GAA
[ENA]
¡û
>C151017635
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
9430916
9430840
-
Phe
GAA
[Ensembl]
¡û
>C151087148
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4077930
4078004
+
Phe
GAA
-
¡û
>C151105073
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
5499554
5499480
-
Phe
GAA
-
¡û
>W1510013171
BBOJ01000037
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
64212
64135
-
Phe
GAA
[ENA]
¡û
>W1510013968
BBPL01000021
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
118297
118223
-
Phe
GAA
[ENA]
¡û
>W1510014053
BBPM01000092
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
5578
5504
-
Phe
GAA
[ENA]
¡û
>W1511529124
JYJG01000006
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
4403
4480
+
Phe
GAA
[ENA]
¡û
>W1511697493
LGDY01000177
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
7835
7758
-
Phe
GAA
[ENA]
¡û
>W1511697762
LGED01000262
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
29694
29770
+
Phe
GAA
[ENA]
¡û
>W1610051182
BBGP01000598
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
1103
1179
+
Phe
GAA
[ENA]
¡û
>C131019815
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
8967602
8967526
-
Phe
GAA
[Ensembl]
¡û
>W1610724062
LMDV01000008
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
200606
200532
-
Phe
GAA
[ENA]
¡û
>W1610730082
LMIN01000008
Actinomycetota
Nocardioides sp. Root224 [LMIN]
200374
200300
-
Phe
GAA
[ENA]
¡û
>W1710047581
BBGP01000598
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
1103
1179
+
Phe
GAA
[ENA]
¡û
>W1710513222
FMZZ01000005
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
317483
317559
+
Phe
GAA
[ENA]
¡û
>W1710515769
FNCC01000002
Actinomycetota
Lentzea fradiae [FNCC]
321590
321665
+
Phe
GAA
[ENA]
¡û
>W1710518159
FNDV01000006
Actinomycetota
Actinokineospora alba album [FNDV]
330115
330189
+
Phe
GAA
[ENA]
¡û
>W1710519482
FNET01000012
Actinomycetota
Lentzea albidocapillata violacea [FNET]
69492
69417
-
Phe
GAA
[ENA]
¡û
>W1710524642
FNIX01000001
Actinomycetota
Lentzea jiangxiensis [FNIX]
31684
31761
+
Phe
GAA
[ENA]
¡û
>W1710524865
FNJB01000006
Actinomycetota
Actinokineospora alba album [FNJB]
128993
128919
-
Phe
GAA
[ENA]
¡û
>W1710550899
FOFR01000001
Actinomycetota
Lentzea xinjiangensis [FOFR]
555466
555543
+
Phe
GAA
[ENA]
¡û
>W1710551017
FOFT01000005
Actinomycetota
Lentzea flaviverrucosa [FOFT]
213157
213082
-
Phe
GAA
[ENA]
¡û
>W1710551138
FOFV01000008
Actinomycetota
Lentzea albida [FOFV]
321395
321472
+
Phe
GAA
[ENA]
¡û
>W1710551765
FOGI01000009
Actinomycetota
Actinokineospora terrae [FOGI]
98434
98360
-
Phe
GAA
[ENA]
¡û
>W1710574768
FOYL01000019
Actinomycetota
Lentzea waywayandensis [FOYL]
25341
25418
+
Phe
GAA
[ENA]
¡û
>W1710584725
FQVU01000002
Actinomycetota
Jatrophihabitans endophyticus [FQVU]
427809
427885
+
Phe
GAA
[ENA]
¡û
>W1710589976
FRAP01000020
Actinomycetota
Pseudonocardia thermophila [FRAP]
97765
97689
-
Phe
GAA
[ENA]
¡û
>W1710606831
FWYC01000009
Actinomycetota
Lentzea albidocapillata [FWYC]
60008
59933
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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