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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144934 (83 seq.)
>W1710892679
LNDZ01000024
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
74581
74505
-
Gln
TTG
[ENA]
¡û
>W1710893310
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
27289
27365
+
Gln
TTG
[ENA]
¡û
>W1710906975
LNOL01000009
Betaproteobacteria
Alcaligenes faecalis [LNOL]
29494
29570
+
Gln
TTG
[ENA]
¡û
>W1710995942
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
98110
98186
+
Gln
TTG
[ENA]
¡û
>W1711135926
LUZQ01000034
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
14910
14986
+
Gln
TTG
[ENA]
¡û
>W1711224655
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
640706
640630
-
Gln
TTG
[ENA]
¡û
>W1711710571
MSZO01000015
Betaproteobacteria
Alcaligenes faecalis [MSZO]
83281
83357
+
Gln
TTG
[ENA]
¡û
>C171007971
CP011171
Betaproteobacteria
Bordetella pertussis E150 [CP011171]
722482
722558
+
Gln
TTG
-
¡û
>C171008521
CP011183
Betaproteobacteria
Bordetella pertussis H520 [CP011183]
721422
721498
+
Gln
TTG
-
¡û
>C171011750
CP011703
Betaproteobacteria
Bordetella pertussis H779 [CP011703]
720362
720438
+
Gln
TTG
-
¡û
>C171013200
CP011732
Betaproteobacteria
Bordetella pertussis I331 [CP011732]
722470
722546
+
Gln
TTG
-
¡û
>C171013874
CP011745
Betaproteobacteria
Bordetella pertussis I762 [CP011745]
3336227
3336151
-
Gln
TTG
-
¡û
>C171014174
CP011751
Betaproteobacteria
Bordetella pertussis J012 [CP011751]
3338329
3338253
-
Gln
TTG
-
¡û
>C171014424
CP011756
Betaproteobacteria
Bordetella pertussis J027 [CP011756]
3335178
3335102
-
Gln
TTG
-
¡û
>C171014624
CP011760
Betaproteobacteria
Bordetella pertussis J072 [CP011760]
3339383
3339307
-
Gln
TTG
-
¡û
>C171015424
CP012078
Betaproteobacteria
Bordetella pertussis H681 [CP012078]
721421
721497
+
Gln
TTG
-
¡û
>C171015746
CP012084
Betaproteobacteria
Bordetella pertussis I976 [CP012084]
3420114
3420038
-
Gln
TTG
-
¡û
>C171020533
CP013090
Betaproteobacteria
Bordetella pertussis J191 [CP013090]
721419
721495
+
Gln
TTG
-
¡û
>C171027685
CP013870
Betaproteobacteria
Bordetella pertussis F501 [CP013870]
720373
720449
+
Gln
TTG
-
¡û
>C171028359
CP013883
Betaproteobacteria
Bordetella pertussis I093 [CP013883]
3331389
3331313
-
Gln
TTG
-
¡û
>C171028606
CP013888
Betaproteobacteria
Bordetella pertussis J104 [CP013888]
3336217
3336141
-
Gln
TTG
-
¡û
>C171028759
CP013891
Betaproteobacteria
Bordetella pertussis J121 [CP013891]
3330985
3330909
-
Gln
TTG
-
¡û
>C171041403
CP015769
Betaproteobacteria
Bordetella pertussis VA-145 [CP015769]
3600607
3600531
-
Gln
TTG
-
¡û
>C171047650
CP016341
Betaproteobacteria
Bordetella holmesii H903 [CP016341]
2791891
2791815
-
Gln
TTG
-
¡û
>W131186390
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
1225032
1225108
+
Gln
TTG
[ENA]
¡û
>WENV180099679
NMRC01022534
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
801
725
-
Gln
TTG
[ENA]
¢þ
>WENV181187811
OEOE01000007
[OEOE] activated sludge metagenome; Activated Sludge
25686
25762
+
Gln
TTG
[ENA]
¢þ
>WENV181222910
OFDC01000601
[OFDC] hot springs metagenome; Water
10756
10832
+
Gln
TTG
[ENA]
¢þ
>WENV181226975
OFDN01000706
[OFDN] hot springs metagenome; Water
14586
14510
-
Gln
TTG
[ENA]
¢þ
>WENV181307943
OFIS01000051
[OFIS] sludge metagenome; sludge
50648
50572
-
Gln
TTG
[ENA]
¢þ
>WENV181401403
OFTX01000110
[OFTX] sludge metagenome; sludge
540
616
+
Gln
TTG
[ENA]
¢þ
>WENV181402526
OFTY01003325
[OFTY] sludge metagenome; sludge
392
316
-
Gln
TTG
[ENA]
¢þ
>W141229536
BAMT01000004
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
121244
121168
-
Gln
TTG
[ENA]
¡û
>W141350151
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
2101480
2101556
+
Gln
TTG
[ENA]
¡û
>WENV183665442
ORJL010463536
[ORJL] groundwater metagenome; groundwater
1007
1083
+
Gln
TTG
[ENA]
¢þ
>WENV183726789
PJTO01000174
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
39207
39131
-
Gln
TTG
[ENA]
¢þ
>WENV183728168
PJTP01053540
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
336
260
-
Gln
TTG
[ENA]
¢þ
>WENV183729394
PJTQ01034180
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
293
217
-
Gln
TTG
[ENA]
¢þ
>WENV183736753
PJUD01000014
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
249829
249753
-
Gln
TTG
[ENA]
¢þ
>WENV183738043
PJUD01072750
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
243
319
+
Gln
TTG
[ENA]
¢þ
>WENV183739480
PJUE01022847
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
592
516
-
Gln
TTG
[ENA]
¢þ
>WENV183740143
PJUF01000471
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
22237
22313
+
Gln
TTG
[ENA]
¢þ
>WENV170551950
CXWJ01031387
[CXWJ] wastewater metagenome; activated sludge
244
320
+
Gln
TTG
[ENA]
¢þ
>WENV170651738
JRYG01001224
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
22124
22200
+
Gln
TTG
[ENA]
¢þ
>WENV170653559
JRYJ01005943
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
6921
6845
-
Gln
TTG
[ENA]
¢þ
>WENV170654952
JTFN01000055
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2842
2918
+
Gln
TTG
[ENA]
¢þ
>WENV170656421
JTFO01014224
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
313
389
+
Gln
TTG
[ENA]
¢þ
>WENV170706154
LNAP01001399
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
53866
53942
+
Gln
TTG
[ENA]
¢þ
>WENV170706381
LNAP01002658
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
22428
22504
+
Gln
TTG
[ENA]
¢þ
>WENV170708959
LNFM01000048
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
325400
325324
-
Gln
TTG
[ENA]
¢þ
>WENV170709720
LNFM01000626
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10517
10593
+
Gln
TTG
[ENA]
¢þ
>C191023123
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
130925
131001
+
Gln
TTG
-
¡û
>C191113939
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
1655715
1655791
+
Gln
TTG
-
¡û
>C191149636
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2462644
2462720
+
Gln
TTG
-
¡û
>C09107572
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
2140652
2140728
+
Gln
TTG
[Ensembl]
¡û
>W1911636089
PVTV01000013
Betaproteobacteria
Jezberella montanilacus MWH-P2sevCIIIb [PVTV]
118431
118353
-
Gln
TTG
[ENA]
¡û
>W1810062135
PDNW01000007
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
136560
136636
+
Gln
TTG
[ENA]
¡û
>W1810089034
PGEK01000020
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
10714
10638
-
Gln
TTG
[ENA]
¡û
>C151101347
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
3545180
3545104
-
Gln
TTG
[Ensembl]
¡û
>C151104090
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
361832
361756
-
Gln
TTG
[Ensembl]
¡û
>ENV09001250
ABSQ01056511
Freshwater sediment metagenome lwMethenol_C1
866
790
-
Gln
TTG
[ENA]
¡û
>ENV09001274
ABSR01000022
Freshwater sediment metagenome lwMethylamine_C1
571
647
+
Gln
TTG
[ENA]
¡û
>ENV09001413
ABSR01005822
Freshwater sediment metagenome lwMethylamine_C1
749
673
-
Gln
TTG
[ENA]
¡û
>ENV09001597
ABSR01035182
Freshwater sediment metagenome lwMethylamine_C1
174
98
-
Gln
TTG
[ENA]
¡û
>C11114206
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
2102582
2102658
+
Gln
TTG
[Ensembl]
¡û
>W1511431976
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
1758530
1758606
+
Gln
TTG
[ENA]
¡û
>W1511433543
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2364339
2364263
-
Gln
TTG
[ENA]
¡û
>C161029061
CP010843
Betaproteobacteria
Bordetella pertussis H542 [CP010843]
741244
741320
+
Gln
TTG
-
¡û
>C161051077
CP013111
Betaproteobacteria
Bordetella sp. N [CP013111]
5944861
5944937
+
Gln
TTG
[Ensembl]
¡û
>WENV057499
AACY023296740
Marine microbial communities from Global Ocean Sampling (GOS)
905
829
-
Gln
TTG
[ENA]
>W121091223
AKMR01000013
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
299062
298986
-
Gln
TTG
[ENA]
¡û
>W1610074268
BCWN01000022
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
51143
51219
+
Gln
TTG
[ENA]
¡û
>W1610077137
BCZH01000052
Betaproteobacteria
Bordetella pertussis NBRC 107857 [BCZH]
14888
14812
-
Gln
TTG
[ENA]
¡û
>W1610686322
LKUW01000118
Betaproteobacteria
Paracidovorax citrulli [LKUW]
123034
123110
+
Gln
TTG
[ENA]
¡û
>W1610752945
LNDZ01000024
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
74581
74505
-
Gln
TTG
[ENA]
¡û
>W1610753576
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
27289
27365
+
Gln
TTG
[ENA]
¡û
>W1610765989
LNOL01000009
Betaproteobacteria
Alcaligenes faecalis [LNOL]
29494
29570
+
Gln
TTG
[ENA]
¡û
>W1610850599
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
98110
98186
+
Gln
TTG
[ENA]
¡û
>W1610947046
LUZQ01000034
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
14910
14986
+
Gln
TTG
[ENA]
¡û
>W1611008619
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
640706
640630
-
Gln
TTG
[ENA]
¡û
>W1710071386
BCWN01000022
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
51143
51219
+
Gln
TTG
[ENA]
¡û
>W1710074775
BCZH01000052
Betaproteobacteria
Bordetella pertussis NBRC 107857 [BCZH]
14888
14812
-
Gln
TTG
[ENA]
¡û
>W1710520767
FNFX01000001
Betaproteobacteria
Methylophilus rhizosphaerae [FNFX]
686450
686526
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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