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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144967 (13 seq.)
>WENV180159968
OAVB01036663
[OAVB] human gut metagenome; faeces
70
146
+
Asp
GTC
[ENA]
¢þ
>WENV180477914
OBYZ01038387
[OBYZ] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV181462838
OGEO01000031
[OGEO] metagenome; Human gut stool
162946
163022
+
Asp
GTC
[ENA]
¢þ
>WENV181826295
OGUL01009768
[OGUL] human gut metagenome; faeces
3391
3315
-
Asp
GTC
[ENA]
¢þ
>WENV182946340
OKVK01020519
[OKVK] human gut metagenome; human gut
1269
1193
-
Asp
GTC
[ENA]
¢þ
>W09133459
ACPD01000003
Bacillota
Clostridium cellulovorans 743B [ACPD]
150949
150873
-
Asp
GTC
[ENA]
¡û
>C151014165
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
2563487
2563411
-
Asp
GTC
[Ensembl]
¡û
>C151101501
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
472800
472876
+
Asp
GTC
[Ensembl]
¡û
>C151101505
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2887006
2886930
-
Asp
GTC
[Ensembl]
¡û
>C151101508
HG917868
Bacillota
Clostridium bornimense type strain: M2/40 [HG917868, HG917869]
2886762
2886686
-
Asp
GTC
[Ensembl]
¡û
>C10102791
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5226271
5226195
-
Asp
GTC
[Ensembl]
¡û
>C10102794
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5225978
5225902
-
Asp
GTC
[Ensembl]
¡û
>W11184352
BABR01000488
Bacillota
Clostridium cellulovorans 743B [BABR]
141
217
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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