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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145029 (30 seq.)
>C171046543
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
14611638
14611714
+
Arg
ACG
-
¡û
>WENV180015894
FSTQ01000113
[FSTQ] metagenome; soil
2249
2323
+
Arg
ACG
[ENA]
¢þ
>WENV180029253
FTJI01275320
[FTJI] metagenome; soil
2777
2851
+
Arg
ACG
[ENA]
¢þ
>WENV180034781
FTKR01305702
[FTKR] metagenome; soil
2777
2851
+
Arg
ACG
[ENA]
¢þ
>WENV180036076
FTLB01244754
[FTLB] metagenome; soil
75
1
-
Arg
ACG
[ENA]
¢þ
>W141073119
ASRX01000026
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
135469
135545
+
Arg
ACG
[ENA]
¡û
>C08008955
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
3494726
3494650
-
Arg
ACG
[Ensembl]
¡û
>C181012523
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
3911654
3911579
-
Arg
ACG
-
¡û
>C191010046
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
3000496
3000421
-
Arg
ACG
-
¡û
>C191010104
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
4334428
4334353
-
Arg
ACG
-
¡û
>C151091975
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
8283526
8283602
+
Arg
ACG
-
¡û
>W1610048970
BBEO01001470
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
136
62
-
Arg
ACG
[ENA]
¡û
>C131010791
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
4332616
4332540
-
Arg
ACG
[Ensembl]
¡û
>W1610520398
JELX01002304
Myxococcota
Sorangium cellulosum [JELX]
3075
3151
+
Arg
ACG
[ENA]
¡û
>W1610520435
JELY01001667
Myxococcota
Sorangium cellulosum [JELY]
1172
1248
+
Arg
ACG
[ENA]
¡û
>W1610520508
JELZ01002709
Myxococcota
Sorangium cellulosum [JELZ]
3444
3368
-
Arg
ACG
[ENA]
¡û
>W1610520555
JEMA01001164
Myxococcota
Sorangium cellulosum [JEMA]
3323
3247
-
Arg
ACG
[ENA]
¡û
>W1610520576
JEMB01001473
Myxococcota
Sorangium cellulosum [JEMB]
5297
5373
+
Arg
ACG
[ENA]
¡û
>W1610520642
JEMC01002802
Myxococcota
Sorangium cellulosum [JEMC]
660
584
-
Arg
ACG
[ENA]
¡û
>W1610520686
JEMD01001649
Myxococcota
Sorangium cellulosum [JEMD]
5374
5450
+
Arg
ACG
[ENA]
¡û
>W1610520742
JEME01001979
Myxococcota
Sorangium cellulosum [JEME]
3515
3439
-
Arg
ACG
[ENA]
¡û
>W1710045442
BBEO01001470
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
136
62
-
Arg
ACG
[ENA]
¡û
>W1710615876
JELX01002304
Myxococcota
Sorangium cellulosum [JELX]
3075
3151
+
Arg
ACG
[ENA]
¡û
>W1710615913
JELY01001667
Myxococcota
Sorangium cellulosum [JELY]
1172
1248
+
Arg
ACG
[ENA]
¡û
>W1710615986
JELZ01002709
Myxococcota
Sorangium cellulosum [JELZ]
3444
3368
-
Arg
ACG
[ENA]
¡û
>W1710616033
JEMA01001164
Myxococcota
Sorangium cellulosum [JEMA]
3323
3247
-
Arg
ACG
[ENA]
¡û
>W1710616054
JEMB01001473
Myxococcota
Sorangium cellulosum [JEMB]
5297
5373
+
Arg
ACG
[ENA]
¡û
>W1710616120
JEMC01002802
Myxococcota
Sorangium cellulosum [JEMC]
660
584
-
Arg
ACG
[ENA]
¡û
>W1710616164
JEMD01001649
Myxococcota
Sorangium cellulosum [JEMD]
5374
5450
+
Arg
ACG
[ENA]
¡û
>W1710616220
JEME01001979
Myxococcota
Sorangium cellulosum [JEME]
3515
3439
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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