This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145063 (40 seq.)
>W1711343655
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
1918061
1917985
-
Thr
CGT
[ENA]
¡û
>W1711343741
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
4165864
4165940
+
Thr
CGT
[ENA]
¡û
>W1711343818
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
1291949
1291873
-
Thr
CGT
[ENA]
¡û
>W1711343849
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
4172857
4172933
+
Thr
CGT
[ENA]
¡û
>W1711343967
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
5643378
5643302
-
Thr
CGT
[ENA]
¡û
>W1711387150
MEGH01000083
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
7448
7372
-
Thr
CGT
[ENA]
¡û
>W1711427787
MIFY01000012
Actinomycetota
Pseudonocardia autotrophica [MIFY]
66762
66688
-
Thr
CGT
[ENA]
¡û
>W1711491732
MKJV01000022
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
100326
100402
+
Thr
CGT
[ENA]
¡û
>W1711491829
MKJX01000077
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
47932
47856
-
Thr
CGT
[ENA]
¡û
>W1711505767
MKVV01000017
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
13179
13103
-
Thr
CGT
[ENA]
¡û
>W131222197
AUBB01000026
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
165376
165452
+
Thr
CGT
[ENA]
¡û
>W131231267
AUII01000014
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
64886
64810
-
Thr
CGT
[ENA]
¡û
>C021606
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
425592
425665
+
Thr
CGT
[Ensembl]
¡û
>WENV180320592
OBKQ01000542
[OBKQ] soil metagenome; Clay
2286
2361
+
Thr
CGT
[ENA]
¢þ
>WENV180342403
OBLJ01016014
[OBLJ] soil metagenome; Clay
547
622
+
Thr
CGT
[ENA]
¢þ
>WENV180691474
OCZS010134836
[OCZS] soil metagenome; soil
255
179
-
Thr
CGT
[ENA]
¢þ
>W141094377
AVCN01000011
Actinomycetota
Saccharopolyspora erythraea D [AVCN]
51114
51188
+
Thr
CGT
[ENA]
¡û
>WENV181168085
OEIU01156101
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
184
109
-
Thr
CGT
[ENA]
¢þ
>WENV181285807
OFGU01000304
[OFGU] soil metagenome; Clay
3409
3334
-
Thr
CGT
[ENA]
¢þ
>WENV181286122
OFGV01000221
[OFGV] soil metagenome; Clay
180
105
-
Thr
CGT
[ENA]
¢þ
>WENV181286451
OFGV01043553
[OFGV] soil metagenome; Clay
338
264
-
Thr
CGT
[ENA]
¢þ
>WENV181292049
OFHD01023946
[OFHD] soil metagenome; Clay
451
526
+
Thr
CGT
[ENA]
¢þ
>WENV181293274
OFHG01000814
[OFHG] soil metagenome; Clay
2000
1925
-
Thr
CGT
[ENA]
¢þ
>WENV181294290
OFHH01000005
[OFHH] soil metagenome; Clay
27592
27517
-
Thr
CGT
[ENA]
¢þ
>WENV181296782
OFHK01000213
[OFHK] soil metagenome; Clay
16071
15996
-
Thr
CGT
[ENA]
¢þ
>W141757760
JNYD01000004
Actinomycetota
Pseudonocardia autotrophica [JNYD]
56828
56752
-
Thr
CGT
[ENA]
¡û
>W1910038424
BEGX01000063
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
34565
34641
+
Thr
CGT
[ENA]
¡û
>W1910182910
BJNG01000058
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
9887
9962
+
Thr
CGT
[ENA]
¡û
>W1910994835
NKYF01000002
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
416673
416597
-
Thr
CGT
[ENA]
¡û
>W1911572258
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
805838
805912
+
Thr
CGT
[ENA]
¡û
>W1810121485
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
3128363
3128287
-
Thr
CGT
[ENA]
¡û
>C151087166
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
3337616
3337540
-
Thr
CGT
-
¡û
>C151087196
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
5410836
5410760
-
Thr
CGT
-
¡û
>W10100223
ABFV01000029
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
38998
38924
-
Thr
CGT
[ENA]
¡û
>W10128097
AEGE01000172
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
3446
3522
+
Thr
CGT
[ENA]
¡û
>W11100223
ABFV01000029
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
38998
38924
-
Thr
CGT
[ENA]
¡û
>C11117084
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
6868604
6868528
-
Thr
CGT
[Ensembl]
¡û
>W11136809
AEGE01000172
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
3446
3522
+
Thr
CGT
[ENA]
¡û
>C161061290
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
2487780
2487856
+
Thr
CGT
[Ensembl]
¡û
>W1710514731
FNBE01000010
Actinomycetota
Pseudonocardia oroxyli [FNBE]
170348
170272
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK