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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145104 (66 seq.)
>W1710792904
LJOU01000015
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
59898
59822
-
Met
CAT
[ENA]
¡û
>W1711283623
LZQD01000008
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
129531
129607
+
Met
CAT
[ENA]
¡û
>W1711335604
MBQX01000140
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
21930
21856
-
Met
CAT
[ENA]
¡û
>W1711335611
MBQY01000001
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
212662
212735
+
Met
CAT
[ENA]
¡û
>W1711377901
MDZH01000173
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
47846
47919
+
Met
CAT
[ENA]
¡û
>W1711603014
MOLN01000003
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
10939
11012
+
Met
CAT
[ENA]
¡û
>W1711711411
MTAX01000008
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
73007
73083
+
Met
CAT
[ENA]
¡û
>W1711772008
MVGR01000001
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
449446
449373
-
Met
CAT
[ENA]
¡û
>W131063363
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1246692
1246619
-
Met
CAT
[ENA]
¡û
>W131087189
AOCI01000191
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
9529
9602
+
Met
CAT
[ENA]
¡û
>W131203750
ASZQ01000001
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
47409
47336
-
Met
CAT
[ENA]
¡û
>W131110082
APIY01000002
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
1034
1110
+
Met
CAT
[ENA]
¡û
>C171016626
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1040934
1041007
+
Met
CAT
-
¡û
>C171112080
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
2717159
2717086
-
Met
CAT
-
¡û
>W141038425
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
2009295
2009222
-
Met
CAT
[ENA]
¡û
>W141065563
AQPY01000467
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
3046
2973
-
Met
CAT
[ENA]
¡û
>W141242367
CAIH01000151
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
6333
6260
-
Met
CAT
[ENA]
¡û
>W141242416
CAII01000510
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
5740
5813
+
Met
CAT
[ENA]
¡û
>W141242446
CAIJ01000250
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
22777
22704
-
Met
CAT
[ENA]
¡û
>W141242506
CAIK01000427
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
4130
4203
+
Met
CAT
[ENA]
¡û
>W141242513
CAIL01000017
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
21974
21901
-
Met
CAT
[ENA]
¡û
>W141242564
CAIM01000331
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
9385
9312
-
Met
CAT
[ENA]
¡û
>W141242613
CAIN01000233
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
4140
4213
+
Met
CAT
[ENA]
¡û
>W141242636
CAIO01000136
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
4264
4191
-
Met
CAT
[ENA]
¡û
>W141242692
CAIP01000257
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
11428
11501
+
Met
CAT
[ENA]
¡û
>W141242732
CAIQ01000335
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
13379
13306
-
Met
CAT
[ENA]
¡û
>C08006361
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
5171484
5171411
-
Met
CAT
[Ensembl]
¡û
>C08006932
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5428018
5427945
-
Met
CAT
[Ensembl]
¡û
>WENV170680615
LFEF01003422
[LFEF] freshwater metagenome; waterbloom
18896
18969
+
Met
CAT
[ENA]
¢þ
>WENV170983291
MWVV01018775
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1349
1422
+
Met
CAT
[ENA]
¢þ
>WENV170989558
MWVZ01052171
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
662
589
-
Met
CAT
[ENA]
¢þ
>WENV170998755
MWWJ01100600
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
273
349
+
Met
CAT
[ENA]
¢þ
>C181005039
AP018281
Cyanobacteriota
Chondrocystis sp. NIES-4102 [AP018281]
1173481
1173406
-
Met
CAT
-
¡û
>C181046186
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2093934
2093861
-
Met
CAT
-
¡û
>C191007273
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
3042370
3042297
-
Met
CAT
-
¡û
>W1910008418
BDGE01000079
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
7302
7378
+
Met
CAT
[ENA]
¡û
>W1910020361
BDSG01000072
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
5890
5963
+
Met
CAT
[ENA]
¡û
>W1910020401
BDSM01000035
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
6593
6666
+
Met
CAT
[ENA]
¡û
>W1910038666
BEIU01000011
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
36852
36779
-
Met
CAT
[ENA]
¡û
>W1910038683
BEIV01000004
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
91419
91346
-
Met
CAT
[ENA]
¡û
>W1910067374
BEYQ01000015
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
36996
36923
-
Met
CAT
[ENA]
¡û
>W1910067407
BFAC01000010
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
82369
82442
+
Met
CAT
[ENA]
¡û
>W1910142324
BIFY01000017
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
2029
2102
+
Met
CAT
[ENA]
¡û
>W1910665572
MCIH01000096
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
10991
11064
+
Met
CAT
[ENA]
¡û
>W1910768678
MOLZ01000090
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
9630
9703
+
Met
CAT
[ENA]
¡û
>W1910909801
NGZU01000030
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
11711
11635
-
Met
CAT
[ENA]
¡û
>W1910910189
NHAE01000021
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
26642
26566
-
Met
CAT
[ENA]
¡û
>W1911070809
NMQD01001151
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
222
146
-
Met
CAT
[ENA]
¡û
>W1911153652
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1997742
1997815
+
Met
CAT
[ENA]
¡û
>W1911153692
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
2190244
2190317
+
Met
CAT
[ENA]
¡û
>W1810355678
PVMC01000076
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
5421
5495
+
Met
CAT
[ENA]
¡û
>C151004182
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
3129388
3129312
-
Met
CAT
[Ensembl]
¡û
>C151079357
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1048158
1048231
+
Met
CAT
[Ensembl]
¡û
>C151080685
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
279763
279836
+
Met
CAT
-
¡û
>W1510013624
BBPA01000025
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
2719
2646
-
Met
CAT
[ENA]
¡û
>W10128303
CACA01000359
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
12572
12645
+
Met
CAT
[ENA]
¡û
>W11185273
CACA01000359
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
12572
12645
+
Met
CAT
[ENA]
¡û
>C161097331
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
1014298
1014222
-
Met
CAT
[Ensembl]
¡û
>C131004505
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
429645
429721
+
Met
CAT
[Ensembl]
¡û
>W1610550829
JXYX01000008
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
18308
18381
+
Met
CAT
[ENA]
¡û
>W1610656908
LJOU01000015
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
59898
59822
-
Met
CAT
[ENA]
¡û
>W1710005103
AJUS01001792
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
96
23
-
Met
CAT
[ENA]
¡û
>W1710005140
AJUT01001681
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
96
23
-
Met
CAT
[ENA]
¡û
>W1710005176
AJUU01001666
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
256
183
-
Met
CAT
[ENA]
¡û
>W1710609646
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
50481
50405
-
Met
CAT
[ENA]
¡û
>W1710660706
JXYX01000008
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
18308
18381
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK