This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145208 (55 seq.)
>W1710778643
LJDE01000001
Alphaproteobacteria
Brucella abortus [LJDE]
925439
925363
-
Met
CAT
[ENA]
¡û
>W1710797282
LJSX01000027
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
479
403
-
Met
CAT
[ENA]
¡û
>W1710862257
LMEG01000005
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
112213
112289
+
Met
CAT
[ENA]
¡û
>W1711116205
LUAV01000014
Alphaproteobacteria
Ensifer aridi [LUAV]
108339
108263
-
Met
CAT
[ENA]
¡û
>W1711431208
MIJQ01000023
Alphaproteobacteria
Brucella melitensis [MIJQ]
322495
322571
+
Met
CAT
[ENA]
¡û
>W1711960003
NCRI01000001
Alphaproteobacteria
Brucella melitensis [NCRI]
36242
36166
-
Met
CAT
[ENA]
¡û
>W131222246
AUBC01000013
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
103376
103452
+
Met
CAT
[ENA]
¡û
>w026502
ABAY01000363
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
2799
2726
-
Met
CAT
[ENA]
¡û
>C171021004
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
3121280
3121204
-
Met
CAT
-
¡û
>C171054613
CP016977
Alphaproteobacteria
Brucella canis 2010009751 [CP016977, CP016978]
1547686
1547762
+
Met
CAT
-
¡û
>C171107680
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2232115
2232039
-
Met
CAT
-
¡û
>C171117267
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
1871352
1871428
+
Met
CAT
-
¡û
>C171123383
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
2414647
2414723
+
Met
CAT
-
¡û
>C171123666
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
3167727
3167651
-
Met
CAT
-
¡û
>WENV180691093
OCZS010059293
[OCZS] soil metagenome; soil
285
209
-
Met
CAT
[ENA]
¢þ
>WENV181166718
OEIU01001317
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1031
1107
+
Met
CAT
[ENA]
¢þ
>WENV181166826
OEIU01002793
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
474
550
+
Met
CAT
[ENA]
¢þ
>WENV181234100
OFET01003100
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
2059
2135
+
Met
CAT
[ENA]
¢þ
>WENV181234513
OFEU01000239
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
50818
50894
+
Met
CAT
[ENA]
¢þ
>WENV181234753
OFEU01003995
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1348
1272
-
Met
CAT
[ENA]
¢þ
>W141156801
AXNA01000001
Alphaproteobacteria
Brucella abortus 89-2646-1238 [AXNA]
913943
914019
+
Met
CAT
[ENA]
¡û
>W141157072
AXNF01000001
Alphaproteobacteria
Brucella canis 96-7258 [AXNF]
1482130
1482206
+
Met
CAT
[ENA]
¡û
>W08006158
ABIP01000030
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
72842
72918
+
Met
CAT
[ENA]
¡û
>C08006418
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
2776827
2776903
+
Met
CAT
[Ensembl]
¡û
>WENV183749928
PPFU01233424
[PPFU] hypolithon metagenome; Antarctic Hypolithon
759
835
+
Met
CAT
[ENA]
¢þ
>WENV170010760
APMI01027962
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
902
978
+
Met
CAT
[ENA]
¢þ
>WENV170011592
APMI01076000
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170012150
APMI01126637
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1080
1156
+
Met
CAT
[ENA]
¢þ
>WENV170012213
APMI01136790
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
514
590
+
Met
CAT
[ENA]
¢þ
>WENV170482765
CEVM01057584
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
113
37
-
Met
CAT
[ENA]
¢þ
>WENV170649087
JRHI01006028
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
4769
4693
-
Met
CAT
[ENA]
¢þ
>WENV170683146
LFIK01005412
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
9937
10013
+
Met
CAT
[ENA]
¢þ
>W141821072
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
2991906
2991982
+
Met
CAT
[ENA]
¡û
>C09107828
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
2316147
2316223
+
Met
CAT
[Ensembl]
¡û
>W1911708581
QOWC01000178
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
15357
15433
+
Met
CAT
[ENA]
¡û
>W1810368609
PVZS01000032
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
40892
40968
+
Met
CAT
[ENA]
¡û
>SRA1010223
SRR020491.495127
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
105
31
-
Met
CAT
[SRA]
>W11150246
AEVM01000014
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
2733
2657
-
Met
CAT
[ENA]
¡û
>C121003448
CP002931
Alphaproteobacteria
Brucella melitensis NI [CP002931, CP002932]
1563913
1563989
+
Met
CAT
[Ensembl]
¡û
>C121006447
CP003128
Alphaproteobacteria
Brucella suis VBI22 [CP003128, CP003129]
1547795
1547871
+
Met
CAT
[Ensembl]
¡û
>C161108441
LN997863
Alphaproteobacteria
Brucella vulpis F60 [LN997863, LN997864]
1268403
1268327
-
Met
CAT
[Ensembl]
¡û
>W121020782
AGVG01000009
Alphaproteobacteria
Brucella abortus bv. 1 str. NI474 [AGVG]
327892
327968
+
Met
CAT
[ENA]
¡û
>W121066142
AJQP01000037
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
28808
28884
+
Met
CAT
[ENA]
¡û
>W121066275
AJQR01000361
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
17606
17530
-
Met
CAT
[ENA]
¡û
>W121113438
ALOP01000136
Alphaproteobacteria
Brucella abortus BCB034 [ALOP]
5904
5980
+
Met
CAT
[ENA]
¡û
>W1610516191
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
362588
362512
-
Met
CAT
[ENA]
¡û
>W1610635927
LITW01000002
Alphaproteobacteria
Brucella abortus [LITW]
36946
36870
-
Met
CAT
[ENA]
¡û
>W1610636291
LIUD01000002
Alphaproteobacteria
Brucella abortus [LIUD]
42672
42596
-
Met
CAT
[ENA]
¡û
>W1610642816
LJDE01000001
Alphaproteobacteria
Brucella abortus [LJDE]
925439
925363
-
Met
CAT
[ENA]
¡û
>W1610661239
LJSX01000027
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
479
403
-
Met
CAT
[ENA]
¡û
>W1610673130
LKEE01000012
Alphaproteobacteria
Brucella melitensis C-573 [LKEE]
36160
36084
-
Met
CAT
[ENA]
¡û
>W1610724603
LMEG01000005
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
112213
112289
+
Met
CAT
[ENA]
¡û
>W1710501482
FMBM01000001
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
362588
362512
-
Met
CAT
[ENA]
¡û
>W1710770700
LITW01000002
Alphaproteobacteria
Brucella abortus [LITW]
36946
36870
-
Met
CAT
[ENA]
¡û
>W1710771064
LIUD01000002
Alphaproteobacteria
Brucella abortus [LIUD]
42672
42596
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK