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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145239 (67 seq.)
>W1711178139
LWGM01000053
Actinomycetota
Isoptericola variabilis [LWGM]
7479
7555
+
Met
CAT
[ENA]
¡û
>W1711660605
MQSU01000001
Actinomycetota
Boudabousia liubingyangii VUL4_1 [MQSU]
156406
156330
-
Met
CAT
[ENA]
¡û
>W1711660649
MQSV01000001
Actinomycetota
Boudabousia liubingyangii VUL4_2 [MQSV]
418871
418947
+
Met
CAT
[ENA]
¡û
>W131182576
ARQM01000011
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
593943
594019
+
Met
CAT
[ENA]
¡û
>C171068088
CP017812
Actinomycetota
Boudabousia tangfeifanii VUL4_3 [CP017812]
505825
505901
+
Met
CAT
-
¡û
>WENV180193224
OAZW01000226
[OAZW] human gut metagenome; faeces
69088
69014
-
Met
CAT
[ENA]
¢þ
>WENV180363929
OBNZ01026858
[OBNZ] marine metagenome; ENVO:00002010
291
217
-
Met
CAT
[ENA]
¢þ
>WENV180420549
OBVO01007420
[OBVO] human gut metagenome; faeces
507
431
-
Met
CAT
[ENA]
¢þ
>W141042840
AMEW01000008
Actinomycetota
Actinomyces sp. oral taxon 181 oral taxon 181 str. F0379 [AMEW]
242365
242441
+
Met
CAT
[ENA]
¡û
>WENV181126171
OEFV01013575
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
555
629
+
Met
CAT
[ENA]
¢þ
>WENV181187133
OENY01000058
[OENY] human gut metagenome; human gut
53596
53522
-
Met
CAT
[ENA]
¢þ
>WENV181437324
OGDF01091586
[OGDF] human gut metagenome; human gut
703
779
+
Met
CAT
[ENA]
¢þ
>W141220264
AZXR01000244
Actinomycetota
Promicromonospora kroppenstedtii DSM 19349 [AZXR]
3944
4020
+
Met
CAT
[ENA]
¡û
>W141241400
CAHH01000007
Actinomycetota
Timonella senegalensis JC301 [CAHH]
279
205
-
Met
CAT
[ENA]
¡û
>WENV182519756
OIWP01070416
[OIWP] human gut metagenome; faeces
143
219
+
Met
CAT
[ENA]
¢þ
>WENV182540475
OJAJ01003194
[OJAJ] seawater metagenome; Sea water
1063
1137
+
Met
CAT
[ENA]
¢þ
>WENV182540875
OJAQ01000212
[OJAQ] seawater metagenome; Sea water
10934
11008
+
Met
CAT
[ENA]
¢þ
>WENV182583200
OJHD01001131
[OJHD] seawater metagenome; Sea water
709
635
-
Met
CAT
[ENA]
¢þ
>WENV182584947
OJHG01036442
[OJHG] seawater metagenome; Sea water
286
212
-
Met
CAT
[ENA]
¢þ
>WENV182849246
OKKO01005075
[OKKO] human gut metagenome; human gut
480
406
-
Met
CAT
[ENA]
¢þ
>WENV183055081
OLGW01004436
[OLGW] seawater metagenome; Sea water
680
754
+
Met
CAT
[ENA]
¢þ
>WENV183059109
OLHS01004763
[OLHS] seawater metagenome; Sea water
323
249
-
Met
CAT
[ENA]
¢þ
>WENV170118785
CENJ01089247
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
162
86
-
Met
CAT
[ENA]
¢þ
>WENV170570751
FLOH01000020
[FLOH] marine metagenome; water
486327
486253
-
Met
CAT
[ENA]
¢þ
>WENV170572806
FLOH01001317
[FLOH] marine metagenome; water
3791
3865
+
Met
CAT
[ENA]
¢þ
>C191056063
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
607089
607163
+
Met
CAT
-
¡û
>C191143964
CP035493
Actinomycetota
Xylanimonas protaetiae FW10M-9 [CP035493]
1828973
1829049
+
Met
CAT
-
¡û
>C191144071
CP035495
Actinomycetota
Xylanimonas allomyrinae 2JSPR-7 [CP035495]
3454920
3454996
+
Met
CAT
-
¡û
>W141769463
JOFV01000010
Actinomycetota
Oerskovia turbata [JOFV]
135612
135536
-
Met
CAT
[ENA]
¡û
>W09110385
ABVC01000008
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [ABVC]
63016
63092
+
Met
CAT
[ENA]
¡û
>W1911765565
QXCY01000001
Actinomycetota
Promicromonospora thailandica SAI-039 [QXCY]
1816028
1815952
-
Met
CAT
[ENA]
¡û
>W1911783436
QXTH01000001
Actinomycetota
Antribacter gilvus CFH 30434 [QXTH]
615461
615537
+
Met
CAT
[ENA]
¡û
>W1810058312
PDJJ01000001
Actinomycetota
Isoptericola jiangsuensis DSM 21863 [PDJJ]
895485
895561
+
Met
CAT
[ENA]
¡û
>W1810365168
PVTW01000005
Actinomycetota
Isoptericola sp. CG 20/1183 CG 20 [PVTW]
7568
7644
+
Met
CAT
[ENA]
¡û
>W1810365215
PVTX01000005
Actinomycetota
Isoptericola halotolerans CG 23 [PVTX]
273022
272946
-
Met
CAT
[ENA]
¡û
>W1810514183
QBUG01000002
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
545478
545402
-
Met
CAT
[ENA]
¡û
>W1810573661
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
733162
733238
+
Met
CAT
[ENA]
¡û
>W1810683857
QKWH01000001
Actinomycetota
Xylanimonas oleitrophica PW21 [QKWH]
4883
4959
+
Met
CAT
[ENA]
¡û
>SRA1035780
SRR035089.373495
454 Sequencing (SRP001810)
316
242
-
Met
CAT
[SRA]
>SRA1046285
SRR035093.271116
454 Sequencing (SRP001814)
220
294
+
Met
CAT
[SRA]
>SRA1046730
SRR035093.372392
454 Sequencing (SRP001814)
301
227
-
Met
CAT
[SRA]
>W1510010489
BBLU01000003
Actinomycetota
Demequina mangrovi NBRC 105856 [BBLU]
107159
107085
-
Met
CAT
[ENA]
¡û
>W1510010536
BBLV01000006
Actinomycetota
Demequina gelatinilytica NBRC 109390 [BBLV]
27457
27383
-
Met
CAT
[ENA]
¡û
>W1510010606
BBLW01000008
Actinomycetota
Demequina phytophila NBRC 109391 [BBLW]
120437
120363
-
Met
CAT
[ENA]
¡û
>W1510010629
BBLX01000005
Actinomycetota
Demequina maris NBRC 109392 [BBLX]
24770
24844
+
Met
CAT
[ENA]
¡û
>W1510010688
BBLY01000005
Actinomycetota
Demequina pelophila NBRC 109393 [BBLY]
313267
313193
-
Met
CAT
[ENA]
¡û
>W1510010718
BBLZ01000002
Actinomycetota
Demequina soli NBRC 109394 [BBLZ]
214836
214910
+
Met
CAT
[ENA]
¡û
>W1510010764
BBMA01000002
Actinomycetota
Demequina silvatica NBRC 109395 [BBMA]
243781
243707
-
Met
CAT
[ENA]
¡û
>W1510010804
BBMB01000004
Actinomycetota
Demequina subtropica NBRC 109396 [BBMB]
122134
122208
+
Met
CAT
[ENA]
¡û
>W1510010881
BBMC01000010
Actinomycetota
Demequina rhizosphaerae NBRC 109397 [BBMC]
3802
3876
+
Met
CAT
[ENA]
¡û
>W1510010907
BBMD01000002
Actinomycetota
Demequina maris NBRC 109398 [BBMD]
421607
421681
+
Met
CAT
[ENA]
¡û
>W1510010938
BBME01000009
Actinomycetota
Demequina iriomotensis NBRC 109399 [BBME]
512642
512716
+
Met
CAT
[ENA]
¡û
>W1510011010
BBMF01000006
Actinomycetota
Demequina maris NBRC 110048 [BBMF]
148862
148936
+
Met
CAT
[ENA]
¡û
>W1510011029
BBMG01000003
Actinomycetota
Demequina rhizosphaerae NBRC 110049 [BBMG]
286587
286661
+
Met
CAT
[ENA]
¡û
>W1510011073
BBMH01000005
Actinomycetota
Demequina rhizosphaerae NBRC 110050 [BBMH]
118090
118164
+
Met
CAT
[ENA]
¡û
>W1510015406
BBQZ01000001
Actinomycetota
Demequina salsinemoris NBRC 105323 [BBQZ]
256546
256620
+
Met
CAT
[ENA]
¡û
>C10114214
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
657940
658016
+
Met
CAT
[Ensembl]
¡û
>C11111553
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
664594
664670
+
Met
CAT
[Ensembl]
¡û
>C161068401
CP014209
Actinomycetota
Isoptericola dokdonensis DS-3 [CP014209]
1778144
1778068
-
Met
CAT
[Ensembl]
¡û
>W1610051479
BBGW01001073
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
483
407
-
Met
CAT
[ENA]
¡û
>W1610074051
BCWJ01000009
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
37581
37505
-
Met
CAT
[ENA]
¡û
>W1710047857
BBGW01001073
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
483
407
-
Met
CAT
[ENA]
¡û
>W1710050279
BBRI01000002
Actinomycetota
Demequina sp. NBRC 110052 [BBRI]
1143508
1143434
-
Met
CAT
[ENA]
¡û
>W1710050382
BBRK01000004
Actinomycetota
Demequina sp. NBRC 110054 [BBRK]
417511
417437
-
Met
CAT
[ENA]
¡û
>W1710071169
BCWJ01000009
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
37581
37505
-
Met
CAT
[ENA]
¡û
>W1710542656
FNZI01000002
Actinomycetota
Demequina mangrovi [FNZI]
250368
250442
+
Met
CAT
[ENA]
¡û
>W1710604039
FUZQ01000002
Actinomycetota
Krasilnikoviella flava [FUZQ]
234672
234748
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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