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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145265 (24 seq.)
>WENV181408985
OGCH01030134
[OGCH] hot springs metagenome; hot springs
1
77
+
Met
CAT
[ENA]
¢þ
>WENV181409099
OGCH01050017
[OGCH] hot springs metagenome; hot springs
1
77
+
Met
CAT
[ENA]
¢þ
>C08011015
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
1792258
1792184
-
Met
CAT
[Ensembl]
¡û
>WENV170675742
LDZQ01000406
[LDZQ] terrestrial metagenome; oil reservoir sample I2
9811
9735
-
Met
CAT
[ENA]
¢þ
>WENV170675743
LDZQ01000407
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1251
1327
+
Met
CAT
[ENA]
¢þ
>WENV170676428
LDZR01002677
[LDZR] terrestrial metagenome; oil reservoir sample K2
1254
1330
+
Met
CAT
[ENA]
¢þ
>WENV170676471
LDZR01002722
[LDZR] terrestrial metagenome; oil reservoir sample K2
1251
1327
+
Met
CAT
[ENA]
¢þ
>WENV170676961
LDZS01003640
[LDZS] terrestrial metagenome; oil reservoir sample K3
402
325
-
Met
CAT
[ENA]
¢þ
>W141561607
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
536591
536668
+
Met
CAT
[ENA]
¡û
>W141778857
JONI01000005
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
292167
292091
-
Met
CAT
[ENA]
¡û
>C141000351
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
1827384
1827307
-
Met
CAT
-
¡û
>C141000371
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1306041
1306117
+
Met
CAT
-
¡û
>C151001649
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1782215
1782139
-
Met
CAT
-
¡û
>C151001687
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
1267600
1267676
+
Met
CAT
-
¡û
>C11123144
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
1890899
1890975
+
Met
CAT
[Ensembl]
¡û
>C161005110
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
487534
487458
-
Met
CAT
[Ensembl]
¡û
>W1610612544
LGEV01000039
Thermotogota
Thermotoga sp. 50_64 [LGEV]
9811
9735
-
Met
CAT
[ENA]
¡û
>W1610612545
LGEV01000040
Thermotogota
Thermotoga sp. 50_64 [LGEV]
1251
1327
+
Met
CAT
[ENA]
¡û
>W1610612933
LGFH01000001
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
1254
1330
+
Met
CAT
[ENA]
¡û
>W1610612976
LGFH01000046
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
1251
1327
+
Met
CAT
[ENA]
¡û
>W1710733942
LGEV01000039
Thermotogota
Thermotoga sp. 50_64 [LGEV]
9811
9735
-
Met
CAT
[ENA]
¡û
>W1710733943
LGEV01000040
Thermotogota
Thermotoga sp. 50_64 [LGEV]
1251
1327
+
Met
CAT
[ENA]
¡û
>W1710734215
LGFH01000001
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
1254
1330
+
Met
CAT
[ENA]
¡û
>W1710734258
LGFH01000046
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
1251
1327
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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